Vibrio parahaemolyticus O1 K33 CDC_K4557: M636_03660
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Entry
M636_03660 CDS
T02760
Name
(GenBank) RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
vpk
Vibrio parahaemolyticus O1:K33 CDC_K4557
Pathway
vpk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vpk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
M636_03660
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vpk03019
]
M636_03660
Enzymes [BR:
vpk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
M636_03660
Messenger RNA biogenesis [BR:
vpk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
M636_03660
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
SNF2-rel_dom
P-loop_SecA
AAA_22
Helicase_RecD
AAA_19
Helicase_C_2
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
AGQ96441
LinkDB
All DBs
Position
II:812964..814217
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AA seq
417 aa
AA seq
DB search
MSVNFADLGIEQQLVETLNNMNIVTPTPVQEKSIPHVLEDKDLLAAAQTGTGKTAAFGLP
IIQAVQQKKRNGTPHALILVPTRELAQQVFDNLTQYAEHTDLRIVCVYGGTSIGVQKNKL
EEGADILIATPGRLLDHLFNGNVNISKTGVLVLDEADRMLDMGFWPDLQRILRRLPNDKQ
IMLFSATFEKRIKTIAYKLMDSPVEVEVSPANTTAETVKQMVYPVDKKRKRELLAYLIGS
RNWQQVLVFTKTKQGSDELAKELKLDGIKAVSINGDKSQGARQRALDEFKQGKVRALIAT
DVAARGLDIQELEQVVNFDMPFKAEDYVHRIGRTGRAGKSGLAVSLMSQDEEYLLRAIET
LLDQRLPQEWLEGFEPSLIEEVEPERDGGGRRKSRSSEKRKLKAKLAIHKNRGKHRK
NT seq
1254 nt
NT seq
+upstream
nt +downstream
nt
atgtccgttaattttgctgatcttggcattgaacaacagttagtcgaaacgttgaacaat
atgaatattgtgacgccaacgccagtccaagaaaaatcgattccccacgtactggaagac
aaagatcttcttgcggctgcgcaaacgggtaccggtaaaacggcggcatttggtttgccg
attattcaggcggtacagcaaaagaaacgtaatggcacacctcacgctctcatcctagtt
ccgactcgtgaattggcgcagcaagtgtttgacaatttaacgcaatacgcggaacacacg
gatctacgtattgtttgtgtgtacggcggtacaagtattggcgtgcaaaagaacaagttg
gaagagggcgcggatattcttattgctacgccgggccgattgttagaccacttgtttaac
ggcaacgtaaacatttctaaaactggcgtgttggtgcttgatgaagctgaccgaatgttg
gacatgggtttttggcctgatctgcaacgcattcttcgtcgactaccgaatgacaaacaa
atcatgctgttttcggcgacgtttgaaaaacgcattaaaaccatcgcttacaaactgatg
gattctcctgttgaggtggaagtgtctccagcgaatacaacggcagaaacggttaaacag
atggtgtatccagttgataaaaagcgtaagcgtgagttgctagcgtatttaattggttca
cgaaactggcaacaagtgcttgttttcactaaaaccaagcaaggcagcgacgagcttgca
aaggagctcaaactggatggtatcaaagcggtttcgattaatggtgataaatcgcaaggt
gctcgccagcgtgcacttgatgaattcaagcaaggtaaagttcgtgccttgattgcgaca
gacgtggcggctcgcggtctagatattcaagagcttgaacaagtggtgaactttgatatg
ccatttaaagccgaagactacgtacatcgtattggtcgtactggccgcgcgggtaaatcc
ggtttggcagtttcgttaatgagccaagatgaagaatacctgcttcgtgcgatcgaaacg
ttgttagaccagcgtttgcctcaagaatggctagaaggattcgaaccaagtctaatcgaa
gaggtagaacctgagcgtgatggtggcggtcgtcgtaagagtcgttcgtcagaaaagcgc
aaactaaaagcaaaactcgcgattcataaaaatcgtggcaagcaccgcaagtaa
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