Vibrio parahaemolyticus O1 K33 CDC_K4557: M636_08265
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Entry
M636_08265 CDS
T02760
Name
(GenBank) diguanylate phosphodiesterase
KO
K18765
RNase E specificity factor CsrD
Organism
vpk
Vibrio parahaemolyticus O1:K33 CDC_K4557
Brite
KEGG Orthology (KO) [BR:
vpk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vpk03019
]
M636_08265
Messenger RNA biogenesis [BR:
vpk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
M636_08265
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EAL
GAPES4
GGDEF
Motif
Other DBs
NCBI-ProteinID:
AGQ97477
LinkDB
All DBs
Position
I:20622..22631
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AA seq
669 aa
AA seq
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MRYTPTLKLSTRLVAFVTMIVICAMFILFVGGTLSFKRLGQEYLTHYLEGIVEVVDKEME
DPDAAYSMQRWMPKMLQASNIVEMTLSTNNAVVYRFKDTSHQIEASALFETEYQLTHNQD
YVIRFKAIPPYLGYSYSMQALWSITLAVILIIFCLMRGVAWLKEQLAGSEMLEERGRMIL
AGRVEQYAKGDKKEWPYTASEALDVLIEELQDARQERSRFDTFIRTQTFLDKLTGTANRV
LFDSKLESALLESGARGAVLLIRIQDWKLVEEEQDKQITDEFIVEVGSLLSNLVQRYPDV
VFSRYYDADFALFLPHQSAKDVANLASQCIRQLEKLTPPDPLDPDNWCHIGITMYKEGER
HSQIIDEAETALRSAQLQNNNNWSRFKKWNHDEEARGSVRWRTLFDTALTSENVILYAQS
VHSISDATHKKALHEELTCRIRDPENGIVKASRFISAIRQVGYEAQMDRAVFHKFLKDFK
ENFDSSKNYALNLNVTPFSSREYFKWFRDELLQLSREQRKCLNFEFVEAQFVRHLDFMRP
VAKMLAGLGCHLMVGQAGRTIVSTHYLKEVDIRYLKLHRSLVAKIDQRHENQLFVRSMLG
AAANSKTKIIAVGIENQQELNTLLELGVYGGQGRYFSAEQQYLPRPQTAQHSQSESQVKL
GRRNRWRKK
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atgaggtataccccaactcttaagctaagcacgcggctggtggcttttgtcaccatgatc
gttatatgcgcaatgtttatcttgtttgtcggcggcaccctctctttcaaacgacttggg
caagaatatcttacccactacttagaagggattgtcgaggttgttgataaagagatggaa
gatcctgatgccgcttattctatgcagcgttggatgcccaaaatgttgcaagcaagcaac
atcgttgaaatgacgctctcgacaaacaacgccgtcgtttatcggttcaaagacacttcg
catcaaatagaagcgtcggccttgtttgaaactgagtaccagttaactcacaatcaagac
tatgtcatccgctttaaagccatccctccttacttaggttacagctactccatgcaggcg
ttgtggtcgatcactctcgccgttattttgatcatcttttgtttgatgcgcggtgttgcg
tggctaaaagagcagcttgctggttcagaaatgctggaagagcgaggaagaatgatcttg
gcggggcgagttgagcaatacgccaagggagataaaaaagagtggccttacaccgcgagt
gaagcacttgacgtgttgattgaagaattacaggatgcgcgccaggagcgcagccgcttt
gatacctttatccgcactcaaacttttctcgataagctcactggaacagccaatcgagtg
ctctttgatagcaagctggaatcggctcttttagagagtggcgcacgtggcgcggtcttg
ctgattcgtattcaagattggaagctcgtggaagaagagcaagataagcaaatcaccgat
gagtttattgttgaagtcggcagcttgttatccaatttagtgcagcgttacccagacgtg
gtgttctctcgttattacgatgccgattttgcactgttcttacctcatcaaagcgccaaa
gatgttgccaacttggcctcacaatgtattcgtcaactagagaaacttacgccgccagat
ccgctcgaccccgacaactggtgccatattggtatcactatgtacaaagagggagagcga
cacagccaaattattgatgaggcggaaacggcactcagaagtgcgcagctacaaaacaac
aataactggagccgttttaagaaatggaaccacgatgaagaagcgcgcggaagtgtgaga
tggcgtacgttatttgatacggcacttacatcagaaaatgtgatactctacgcacaatcg
gttcactcaataagtgatgcgacgcataaaaaagccttacacgaagagttaacatgtcga
attcgggatcctgaaaatggcattgttaaagcgtcccggtttatctctgctatcagacaa
gtgggctatgaagctcaaatggatagagctgtatttcataaattcttaaaagactttaaa
gagaattttgacagctctaaaaattatgctctaaatctaaatgtgacgcctttttcgagt
cgcgaatacttcaagtggtttcgtgatgaacttttacagttgtcacgagagcagagaaag
tgtctcaattttgagtttgtggaagcacaatttgtaagacacttagactttatgcgacca
gtcgctaaaatgctggccggtttgggatgccatctcatggtggggcaagcgggacgaacc
atcgtcagcactcactacctaaaagaagtggacattcgttatctcaagcttcatcgcagc
ttggtagcaaaaatcgatcagcgacatgagaaccagctttttgtccgcagtatgctaggt
gcagcggcgaacagcaaaaccaaaatcatagcagtgggaattgagaatcaacaagagcta
aacacgcttcttgaattaggtgtgtacggcggacaaggacgctatttttctgcagagcag
caatatcttcctcgcccacaaacagcgcaacattctcaatcagaatcccaagttaaattg
ggaagacgaaatcgctggcggaaaaaataa
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