Vibrio parahaemolyticus O1 K33 CDC_K4557: M636_10225
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Entry
M636_10225 CDS
T02760
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
vpk
Vibrio parahaemolyticus O1:K33 CDC_K4557
Pathway
vpk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vpk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
M636_10225
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vpk03019
]
M636_10225
03400 DNA repair and recombination proteins [BR:
vpk03400
]
M636_10225
Enzymes [BR:
vpk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
M636_10225
Messenger RNA biogenesis [BR:
vpk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
M636_10225
DNA repair and recombination proteins [BR:
vpk03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
M636_10225
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
RecQ_Zn_bind
ResIII
Enoyl_reductase
Microp_apicomplexa_22
DDE_3
Motif
Other DBs
NCBI-ProteinID:
AGQ97795
LinkDB
All DBs
Position
I:complement(434435..436399)
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AA seq
654 aa
AA seq
DB search
MYSSLSPKKGFPNMQSTQLLQTLQSVFGFDSLRQGQQPVIESVMNGYSAAAIFPTGSGKS
LCYQLPATMLPNLTLVISPLLALMKDQLSFLQSKGIAAASIDSSQSREEAQRVMVGVKNG
EIKILMISVERLKNERFREFIRQVPISLMVVDEAHCISEWGHNFRPDYLKLPQYQRELNI
PQTLLLTATATPAVIEDMKNKFDIASDHITVTGFYRSNLDISVIPCEESEKQTQLNTIIA
AAPKLPTIVYVTQQQTAEQVAKSLIYIGVNAHAYHAGMKSEVREQIQQQFMAGQIDCIVA
TIAFGMGVDKSDIRRVIHFDLPKSIENYAQEIGRAGRDGQRSECILLGNTSGLTVLENFV
FGDTPERSSISYVLGQIKEHQPQWEVVPLRLSRESNIRQLPLKTLLVYLELAKVIEAKFS
YFAEYRFKFLQNQQFIVNQFQGERREFVEAIFTCSTKAKVWCQVDLDALWMHYHSERSRV
VAALDYFHQNGWVELESKQLTDVYSVLPDTQNIEDITQHLYELFQSKERKDIDRIHAMLG
LFQSSDCLSHQLASYFADHNAPAHCGHCSVCRGQRAVFPPRIYDQPEPAVASAWIAEFVR
LSPSAISNEAIARFLCGISTPLISQLKALKLSGYGALTNVPFEQVLQLVESVRE
NT seq
1965 nt
NT seq
+upstream
nt +downstream
nt
atgtactctagtctatcaccgaagaaaggtttccctaacatgcaaagtacccagttacta
caaacgcttcaatccgtgtttggttttgactcattacgccaaggccaacaaccagttatt
gaatcggtcatgaatggttactctgcagcagcaatattcccaacgggctcgggcaaatct
ctttgttatcaactccccgccaccatgctgccaaacctcactttagtgatctcgccatta
ctggcactaatgaaagatcagctgagctttttgcaaagcaaagggatcgctgccgcttct
attgatagcagccaaagcagagaagaagcgcaacgcgtaatggttggagtcaaaaacggg
gaaatcaaaattttgatgatttctgtcgaacgcctcaaaaacgagcgctttcgcgagttc
attcgtcaagtgccaatctctttgatggtggtcgatgaagcgcactgtatctctgagtgg
ggacataacttccgtccggattacctcaagctgccgcaatatcagcgagaactgaatatt
ccccaaaccttgttgctgaccgccacagcaacacctgccgttattgaggacatgaaaaat
aaattcgatattgcgagtgaccacattactgtaactggcttttaccgttcgaacctcgat
atttcagtcatcccttgcgaagagtccgaaaagcaaacgcaactcaacacgattatcgcc
gcagcccctaaactgccaactatcgtttacgtaacgcaacagcaaactgcagagcaagta
gctaagtcattgatctacattggtgttaacgctcatgcgtatcacgcgggaatgaaaagt
gaagttcgtgagcaaatacaacagcaatttatggcgggccaaattgactgcattgtggcc
acgattgcctttgggatgggtgtcgacaaatccgatattcgccgagtgatccactttgat
ttgcctaaatccattgaaaactatgcccaagaaataggtcgagcaggacgagacggacaa
cgctctgaatgcattctgcttggcaatacttctgggctaactgtattagaaaactttgtg
tttggcgacacgcctgagcgctcttcgattagttatgtattgggtcaaatcaaagagcac
caacctcagtgggaagtcgtgccactacgtttgtctcgcgagagcaatatccgccagtta
ccactcaaaacgctgttggtgtatttagagcttgcgaaagttatcgaggctaagtttagc
tactttgccgaatatcgattcaaattcctacaaaatcagcaattcatcgttaaccaattc
caaggagaacgacgcgagtttgtagaagccattttcacttgttcaaccaaagcgaaagta
tggtgccaagtcgatctcgatgctctttggatgcattatcactcggaacgtagccgcgtt
gtcgctgcactggattactttcatcagaatggttgggttgaactagaaagcaagcagcta
accgatgtgtattccgtcttgcccgatacacagaatatcgaagacatcacgcagcatctg
tacgagctgttccaatctaaagagcgcaaagacatcgaccgaattcacgccatgttgggg
ttgttccaatcgtcagattgtttaagtcatcaattagccagttactttgccgaccacaat
gcccctgctcactgcggtcattgttctgtgtgtcgaggacagagagcggtgttcccacct
cggatttacgatcaacctgaaccagcagtcgcctccgcttggattgcagagtttgtccga
ctttccccttctgcaatcagtaacgaagccatagcccgattcttatgtggcatcagcaca
ccgttgatcagccaacttaaagccttaaagctatctgggtatggtgcattgactaatgtg
cccttcgaacaggtactacaattagttgaaagtgtgcgggaatag
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