Vibrio parahaemolyticus O1 K33 CDC_K4557: M636_10410
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Entry
M636_10410 CDS
T02760
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
vpk
Vibrio parahaemolyticus O1:K33 CDC_K4557
Pathway
vpk03030
DNA replication
vpk03430
Mismatch repair
vpk03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vpk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
M636_10410 (dnaE)
03430 Mismatch repair
M636_10410 (dnaE)
03440 Homologous recombination
M636_10410 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vpk03032
]
M636_10410 (dnaE)
03400 DNA repair and recombination proteins [BR:
vpk03400
]
M636_10410 (dnaE)
Enzymes [BR:
vpk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
M636_10410 (dnaE)
DNA replication proteins [BR:
vpk03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
M636_10410 (dnaE)
DNA repair and recombination proteins [BR:
vpk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
M636_10410 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
AGQ97827
LinkDB
All DBs
Position
I:473023..476502
Genome browser
AA seq
1159 aa
AA seq
DB search
MSDPKFVHLRIHSDFSMVDGINKVPPIVKKVAELGMPAMALTDFTNLCGLVKFYGTAHGS
GVKPIIGADFKMQSDEFGEELTQLTVLAADNAGYKNLTLLISKAYLRGHVQHQPVIDRAW
LAEMSEGLIVLSGAKNGDIGKALLKGNRKLVESCVEFYKQHFPDRFYLELIRTGRPDEET
YLHFAIDLAEQHDLPVVATNEVVFLSADLFDAHEIRVAIHDGYTLEDPRRPKNYSPQQYL
RTEEEMCELFADIPEALENSVEIAKRCNVTVRLGEYFLPAFPTEGMEETEFLVMKSREGL
EERLEFLFPDEEERKKRRPEYDERLQIELDVINQMGFPGYFLIVMEFIQWSKDNAIPVGP
GRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAE
MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDPGMTLEKAFKAEPA
LPELYEADEEVKELIDMCRLLEGCTRNAGKHAGGVVISPTTITDFAPIYADAEGHFPVTQ
FDKNDVETAGLVKFDFLGLRTLTIIDWALGLINPRLEKEGKPPVRIESIPLEDPASFRLL
QNSETTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGREA
ISYPDEKWQHESLKEILDPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEM
AKQRATFEEGAVKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHYPA
EFMAAVMTADMDNTEKVVGLVDECFRMKLTVLPPDINSGLYRFNVDENGAIVYGIGAIKG
VGEGPIDAILEARNKGGHFKDLFDFCARIDLKRVNKRVIEKLIYAGALDRLGPHRAAMMA
SLNDAVKAASQHHQAEAFGQGDMFGVLTDAPEEVENKYTQVPPWPEKVWLEGERETLGLY
LTGHPINAYLKELNKYTSCRLKDATPTRRDQSVTVAGLVIAARVMTTKRGTRIGIMTLDD
RSGRMEVMLFSDALDRYAELLEKDRILVVSGQVSFDDFNGGLKMSAREVMDLGSAREKYA
RGLSVSIDANQINDQFFEQFSRILEPHKAGTVPVNVYYQRADARARLTLGTEWRVTPSDT
LIDDLKQLLGKSQVELEFN
NT seq
3480 nt
NT seq
+upstream
nt +downstream
nt
atgtcagatcccaagttcgtccaccttcgtattcacagtgatttctcgatggtggatggt
atcaataaagttccaccgatagtcaagaaagtcgccgagcttggtatgcctgccatggct
ttgactgacttcaccaacttatgtggtttggtgaagttttatggcacagcgcatggctcc
ggcgttaaaccgatcatcggtgcagatttcaaaatgcaatctgatgaatttggtgaagaa
ctgacccagctgacagtacttgctgccgacaatgcaggttacaagaacctcacgttactg
atttccaaagcgtacttacgtggccacgttcagcaccaacctgtgattgatagggcgtgg
ctggccgagatgtcagaaggcttaatcgttctctctggtgctaaaaatggcgatatcggc
aaagcgctgcttaaaggtaaccgtaaactggttgaaagctgtgtagagttttacaaacag
catttcccggaccgtttctatctagaattgattcgtacaggccgtccggatgaagagacg
tacttgcactttgccatcgatctcgctgagcaacatgacttgcccgtggtcgcgacaaac
gaagtggttttcctaagtgcagaccttttcgatgcgcatgagattcgtgttgcgattcat
gatggttacacactagaagacccacgccgaccaaaaaattacagcccgcagcagtacctt
cgcactgaagaggaaatgtgtgagctgtttgctgatattccagaagcgctagaaaacagt
gttgagatcgccaagcgttgcaacgtgaccgttcgtttaggtgaatacttcttgcccgcc
ttcccaacagaagggatggaagaaactgaattcttggtcatgaagtcgcgcgaaggtttg
gaagagcgtctagagttcctattccctgatgaagaagagcgcaaaaagcgccgtccagaa
tacgacgagcgtttacaaatcgaactcgacgtaatcaaccaaatggggttcccaggctac
ttcttgatcgtaatggagttcatccagtggtcgaaagacaacgcgattccagtcggtcct
ggtcgtggttcgggtgccggttctttggtggcctacgcgctgaaaatcaccgatcttgat
ccgcttgaatatgacttgctcttcgaacgtttcttgaacccagaacgtgtatccatgccc
gatttcgacgtcgacttttgtatggataagcgtgaccaagtgattgatcacgttgccgaa
atgtacggtcgcgatgccgtatctcagatcatcacattcggtacgatggcggcgaaagcg
gtaatccgtgacgttggtcgtgttcttggtcacccatttggtttcgttgaccgtatttcg
aaactggttccgccagatccgggtatgacgctagaaaaagcgtttaaagccgagcctgct
ctgcctgagctttatgaggccgatgaagaagttaaagaactcatcgatatgtgtcgccta
ttagaaggttgtacacgtaacgccggtaagcacgcgggtggtgttgtaatttcaccaacc
acgattacagactttgcgccaatttatgcggatgcggaagggcatttccccgtaactcag
tttgataagaacgacgtagaaactgctggtctggttaagtttgacttcttgggcctacgt
actctaaccattatcgactgggcattagggttgattaacccgcgcttggagaaggaaggt
aaacctcctgttcgtatcgagtcgatacctttggaagatccggcttcgtttcgtttactc
caaaactcagagaccactgcggtattccagcttgaatcgcgtggtatgaaagagctgatc
aaacgacttcagcctgactgttttgaagacatcatcgcattggtggccttgttccgtccg
ggtccgttgcaatcgggcatggtagataactttatcgaccgtaaacatggccgagaagcg
atctcttaccccgatgaaaagtggcaacacgagtcactaaaagaaatcctcgatccgacg
tacggcatcattctgtatcaagaacaggtaatgcagattgcgcaggttttgtctggctac
acccttggtggtgcggatatgctgcgtcgtgcgatgggtaagaaaaagccggaagaaatg
gccaagcagcgtgcaaccttcgaagaaggggcagtgaagaacggtgttgatggcgagttg
gcgatgaaaatcttcgacttggtagaaaagttcgcaggttacggttttaacaaatcgcac
tcagcggcttacgcactggtttcttaccaaacgctgtggcttaaaacgcactatccagct
gaattcatggcggcggtaatgacagccgatatggataacaccgaaaaagtagttggtctg
gtggacgaatgtttccgcatgaaactcaccgtgttgccgccagacatcaactccggttta
taccgtttcaacgttgatgaaaacggtgcgattgtatacggtatcggcgcaatcaaaggt
gtgggtgaaggccctatcgatgcgatactagaagcgcgaaacaaaggtggtcactttaaa
gacctatttgatttctgtgctcgtatcgatctcaaacgtgttaacaaacgcgtcatcgaa
aagctgatttatgcaggtgcacttgaccgacttggccctcatcgagcggcgatgatggcg
tcactgaacgatgccgttaaagcggccagccaacatcaccaagcagaggcctttggccaa
ggcgatatgtttggtgtgttgaccgatgcaccagaagaagttgagaataaatacacgcaa
gtgccaccatggccagaaaaggtttggctagagggtgagcgtgaaacactcggtttatat
ttgaccgggcaccccattaacgcgtatttaaaggaactaaacaaatacaccagttgtcga
ctaaaagacgcgaccccaacacgtcgtgatcaatcggtaacggtagcaggtttagtgatt
gctgcgcgagtgatgacaaccaagcgaggtactcgcattggtatcatgacgttggacgac
cgaagtggtcgaatggaagtaatgctgttctccgatgcacttgatcggtatgctgaactt
ctcgaaaaagacagaattttggtggtttcgggacaggtcagctttgatgacttcaacggt
ggccttaaaatgtcggcgcgtgaagttatggatctcggcagcgcgcgcgaaaaatacgca
cgtggtctgtcggtatcaattgatgctaaccagatcaatgatcaattctttgagcagttt
agtcgtattttagaaccgcacaaagccggaaccgtacccgtcaatgtatactaccagcgt
gccgacgccagagcgcggttaacattgggcaccgaatggcgagtaacgccaagtgataca
ttaatagacgatttaaaacagttgcttggcaaaagccaggtagaactcgaatttaactaa
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