KEGG   Vibrio parahaemolyticus O1 K33 CDC_K4557: M636_10760
Entry
M636_10760        CDS       T02760                                 
Name
(GenBank) RNA polymerase sigma 70
  KO
K02405  RNA polymerase sigma factor FliA
Organism
vpk  Vibrio parahaemolyticus O1:K33 CDC_K4557
Pathway
vpk02020  Two-component system
vpk02040  Flagellar assembly
vpk05111  Biofilm formation - Vibrio cholerae
Brite
KEGG Orthology (KO) [BR:vpk00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    M636_10760
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   05111 Biofilm formation - Vibrio cholerae
    M636_10760
  09142 Cell motility
   02040 Flagellar assembly
    M636_10760
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:vpk03021]
    M636_10760
  09183 Protein families: signaling and cellular processes
   02035 Bacterial motility proteins [BR:vpk02035]
    M636_10760
Transcription machinery [BR:vpk03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     M636_10760
Bacterial motility proteins [BR:vpk02035]
 Flagellar system
  Flagellar assembly proteins
   Stator
    M636_10760
SSDB
Motif
Pfam: Sigma70_r4 Sigma70_r2 Sigma70_r3 Sigma70_r4_2 HTH_23 HTH_10 UPF0122 GerE MarR_2 Rv2175c_wHTH Phage_terminase UPF0175 MarR KORA PhyR_sigma-like
Other DBs
NCBI-ProteinID: AGQ97896
LinkDB
Position
I:543164..543898
AA seq 244 aa
MNKAITYDQHGKFNSQQAFIERYSVLVKRIAHHLLGRLPPSVQVEDLIQAGMIGLIEAQQ
NYDGSKGASFETYAGIRIRGAMLDDMRKGDWVPRSVHKNNREINQAVAELEGVLNRDPTD
SEVAAHLGMSLDQYHSALTDINCSRLVGIEDLGVSDDVISPADETDDSNPFKGVADESFR
KALVESIKQLPEREALVLSLYYDEELNLKEIGDVLGVSESRVSQILSQAMQRLRTKLSAW
TQND
NT seq 735 nt   +upstreamnt  +downstreamnt
gtgaataaagcgataacctatgaccagcatggcaagtttaatagtcagcaagcgttcatt
gagcgctactctgtgttggttaagcgtattgctcaccacctgttaggccgtttaccgccg
agtgttcaggtagaggatttaattcaggccggcatgatcggtcttatcgaagctcagcag
aattatgatggttctaaaggtgcgagctttgaaacttatgctggtatccgcattcgtggc
gccatgttagatgacatgcgcaaaggtgactgggtaccgcgttctgttcataagaataat
cgcgaaattaatcaagcggtcgcagagctggaaggcgtgttaaatcgtgatccgacagat
tctgaagtagcagcacatctcgggatgtcactggatcaatatcatagtgctctgaccgat
ataaactgctcaagattagttggtattgaagatttaggcgtttctgatgatgtgatttca
ccagcagatgaaactgatgacagcaacccatttaagggggtagcagatgaatcgttcaga
aaagcactggttgaatcaataaaacagcttccagagcgtgaagctttagtactttcgctt
tattatgacgaagaactcaatttgaaagaaattggtgatgtattaggtgtaagcgaatct
cgtgtaagccaaatactaagccaagcgatgcaacgtttacgcaccaagctcagtgcgtgg
acacaaaatgactaa

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