Vibrio parahaemolyticus O1 K33 CDC_K4557: M636_12250
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Entry
M636_12250 CDS
T02760
Name
(GenBank) peptidase
KO
K21470
L,D-transpeptidase YcbB
Organism
vpk
Vibrio parahaemolyticus O1:K33 CDC_K4557
Brite
KEGG Orthology (KO) [BR:
vpk00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
vpk01002
]
M636_12250
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
vpk01011
]
M636_12250
Peptidases and inhibitors [BR:
vpk01002
]
Cysteine peptidases
Family C82
M636_12250
Peptidoglycan biosynthesis and degradation proteins [BR:
vpk01011
]
Peptidoglycan biosynthesis and degradation
Transpeptidase
M636_12250
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YkuD
PG_binding_1
Scaffold
HPPK
PG_binding_3
Motif
Other DBs
NCBI-ProteinID:
AGQ98153
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Position
I:870424..872013
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AA seq
529 aa
AA seq
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MASSARIVSVFARVLIMTALMVPFCSFSTVVSLDASAQTEQEGAVEQLSVEKMIHYPTVI
DQLYQSTNFRLNWENESDVEQFIFQMKLVALADVSKEFDNQLHRINQVRWKGDNLDFDLV
MTDSLLMYLSYLEQVPQEGVNWLFANKAHVSFPAPSVDTLSVLSNEITVGKLDQFLASLR
SPLQMDASFNTVFASLSEFSQYQYPFYEQKGLLRIGDPVENKSTLVERMAIVGVDVSYID
SEIPQYDENLELAVKEFQRIHGLNQDGVIGPNTIRWINFSPQQRLHLLALNAERSRIWAK
ERDNVVFVNVPGYEVTYWHDGQPLFESKVVVGRASRKTPIMTGTLDSVILNPTWNVPWKI
MVKDIIPKVKRNPMYLMEHNIQIIRSWTSREIIDPTTINWATVNPRTFPYRMRQASGSHN
ALGLYKFNMPNPQAIYLHDTPSKNLFQQDRRAFSSGCVRVENADQLAELLFKTQGLEERL
EKKRESARSSTTSVPLGERIPVHIIYQTAWLEEGTLYYRDDIYKYDHQG
NT seq
1590 nt
NT seq
+upstream
nt +downstream
nt
atggcaagtagcgcaaggatcgtttcagtgtttgctagggttttaataatgacggcactt
atggtgccgttttgcagcttttctaccgtggtttctctcgatgcttctgcccaaacggag
caagaaggggccgtagagcagttgtctgtcgaaaaaatgatccattatccaacggtgatt
gatcaactttatcaaagtacgaatttccgtttgaattgggaaaatgagagcgatgttgaa
cagttcatttttcagatgaaactggtcgcgcttgctgacgtttccaaagagtttgacaac
caactgcatcgtattaaccaagtaagatggaaaggagacaaccttgacttcgatttggtg
atgaccgattccctccttatgtacctcagctatcttgagcaggttcctcaagaaggcgtt
aactggttgtttgcaaataaagcccatgtgagctttcctgcgcctagtgtggatacgcta
tcggtactgagcaatgagatcacggtagggaagttggaccagtttttagccagcttgcgc
tcgcctttgcaaatggatgcctcgtttaatacggtatttgcttcgctttctgaattctcg
caatatcaatatcctttctatgagcaaaaaggtctgttgcgcatcggtgatccggtagaa
aacaaatcaacccttgttgaacgcatggcgatcgtcggagtagatgtcagttacatcgat
tcagaaataccgcaatacgatgaaaatttggagctggcggtgaaagagttccagcgtatt
catggcttgaaccaagatggcgtaattggtccgaacaccattcgttggatcaacttctct
cctcaacaacgtttgcacttgctggcattgaatgctgagcgttctcgtatttgggcgaaa
gaacgagacaatgtcgtgtttgtgaacgtgccgggttatgaagttacgtactggcatgat
ggtcagccactgtttgaatcaaaagttgtggttggtcgagcttcaagaaaaaccccaatc
atgacgggaacgctagattcggtgatcttaaatcctacttggaatgtgccttggaaaatc
atggtgaaagacattattccaaaagtgaaacgcaatccgatgtatttaatggaacataac
attcaaatcatccgttcttggacgtcgcgcgaaatcatcgatccaaccacgatcaactgg
gcaacagttaatccaagaaccttcccgtaccgcatgcgtcaggcttctggttcgcacaat
gcgttgggtttgtacaagttcaacatgccgaacccacaagccatatatctacacgacact
ccaagtaaaaacttgttccaacaagatagaagggcgtttagctcgggttgtgttcgagta
gaaaacgccgatcaacttgcagagcttctgttcaaaactcaaggtttggaagagcgttta
gagaaaaagcgggaaagcgctcgttcatcaacgacttcggtgccactaggggagcgtatt
ccggtacacatcatctaccaaacagcttggttggaagaaggtacgctgtattaccgagat
gacatctacaaatacgaccatcaaggctaa
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