Vibrio parahaemolyticus O1 K33 CDC_K4557: M636_17440
Help
Entry
M636_17440 CDS
T02760
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
vpk
Vibrio parahaemolyticus O1:K33 CDC_K4557
Brite
KEGG Orthology (KO) [BR:
vpk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
vpk03016
]
M636_17440
Enzymes [BR:
vpk01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
M636_17440
Transfer RNA biogenesis [BR:
vpk03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
M636_17440
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNAseD_HRDC_C
HRDC
DUF7018
Motif
Other DBs
NCBI-ProteinID:
AGR00236
LinkDB
All DBs
Position
I:complement(1998777..1999943)
Genome browser
AA seq
388 aa
AA seq
DB search
MIECQRFAGIFYSEKHVNYQIITKNKDLEQVCAQARDADVVMLDTEFVRIRTFYPQLGLI
QLFDGKHLSLIDPTELTDMTSFIELLKDASVLKVLHACGEDLEVFQNAFGCTPFPMVDTQ
LMAAFLGHGLSTGFATLVEEYLGVALDKSESRTDWMARPLTQKQLDYAAADVHYLLPLYE
KLLDKVTEAGWWEAVQQESDLLVSKRIRETNEENAYLDIKGAWQLKPSELAVLKPLATWR
YREAIKRDLALNFIFKEGDLLTVARLGLTSFKKMEAEGMDSRAVNRHGTKIAAIVKKAKQ
TPPEEYPAKIDRLMDYPGYKQVFKNMKDVVKSAAQKSGLATEFLASKKQINQLISWVWKK
DRDPARLPDVMQGWRLELLGEKMNKALK
NT seq
1167 nt
NT seq
+upstream
nt +downstream
nt
atgatagaatgccagcgttttgctggcattttttatagcgagaagcatgtgaattatcag
attattactaaaaacaaagacctagaacaagtttgtgctcaagcaagagacgcagatgtc
gtaatgctggataccgagttcgtacgtatcaggactttttatccgcaactaggtttgatt
cagcttttcgacggcaagcacttgtcccttatcgatccgacagaattaacggacatgaca
tctttcatcgaactattgaaagatgcatcggtacttaaagtgcttcacgcctgtggcgaa
gatttagaagtattccaaaatgcatttggttgtacgccatttccaatggtcgatacacag
ttaatggcggcgtttcttggccacgggctgtcaacaggtttcgcaacgctggtggaagaa
tacttaggtgttgcgttggacaagagtgaatctcgcaccgactggatggctcgtcctctc
acgcaaaagcaacttgattatgctgcggcagacgttcactacttgttgccactttacgaa
aaattgctcgataaagtcactgaagctggttggtgggaagcggtgcagcaagagagcgac
ttgttggtttccaaacgcattcgcgaaaccaacgaagaaaatgcgtaccttgatattaaa
ggagcgtggcaacttaaaccttcagagttagctgtgttaaagccgctagcgacttggcgt
tatcgtgaagcaatcaagcgcgacttagcactaaacttcatcttcaaagagggtgatttg
ctaacggttgctcgtttaggtttaacaagctttaaaaagatggaagcggaagggatggat
agccgcgcggtcaatcgtcacggtactaaaattgcggccatcgtgaaaaaggctaagcaa
acgccaccagaagaatacccagctaaaattgatcgcctgatggattaccctggttataag
caggttttcaaaaacatgaaagatgtcgtgaaaagtgctgcgcaaaaatcagggttagcg
accgagtttttagcatcgaaaaagcagattaaccagctcatcagttgggtgtggaagaag
gatcgtgatcctgctcgcttgcctgatgttatgcaaggttggcgtctagagttattgggc
gaaaaaatgaataaggcgttgaaataa
DBGET
integrated database retrieval system
