Vibrio parahaemolyticus O1 K33 CDC_K4557: M636_20800
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Entry
M636_20800 CDS
T02760
Name
(GenBank) 5-hydroxymethyluracil DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
vpk
Vibrio parahaemolyticus O1:K33 CDC_K4557
Pathway
vpk03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
vpk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
M636_20800
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vpk03400
]
M636_20800
Enzymes [BR:
vpk01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
M636_20800
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
M636_20800
DNA repair and recombination proteins [BR:
vpk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
M636_20800
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Zn_ribbon_6
Zn_ribbon_IS1595
Auto_anti-p27
DUF6476
Motif
Other DBs
NCBI-ProteinID:
AGQ99420
LinkDB
All DBs
Position
I:complement(2701828..2702637)
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AA seq
269 aa
AA seq
DB search
MPELPEVEVSRMGISPHMVGQTIKAFVFRTPKLRWDIPQELKLLEGQVIRAIHRRAKYLL
IETDAGTAIVHLGMSGSLRVLDADFPAAKHDHVDLKLTNGKVLRYNDPRRFGAWLWCAPG
ESHAVLDHMGPEPLTDAFNSEYIADKAQGKRVAVKQFIMDNKVVVGVGNIYANESLFKSR
ILPTRQAGQVTPQEWVLLVENIKATLKIAINQGGTTLKDFAQADGKPGYFAQELLVYGKA
GKPCPECGEPLQELKIGQRNTFFCNECQQ
NT seq
810 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaattaccagaagttgaagtaagccggatgggtattagtccacatatggttgga
caaacgattaaggcatttgtttttcgcacacccaaactgcgctgggatatcccgcaagag
ctgaaattgcttgaagggcaagtgattcgagccattcatcgtcgcgcaaagtatttgctc
atagaaacggatgcaggaactgctattgtgcaccttggaatgtcaggctcgttacgtgtg
ttggatgctgatttccctgcggctaagcacgatcatgtcgatctcaaacttacaaatggt
aaagtgctgcgttataacgaccctcgacgctttggtgcttggctatggtgcgctcctggt
gagtcccatgcggtacttgatcatatgggaccagagcctctaactgatgcgtttaatagc
gagtacattgctgataaagcgcaaggtaagcgtgtcgcggtaaagcagttcatcatggac
aacaaggtcgtggtcggtgtggggaatatttacgccaatgaatctctgtttaaatctcgt
attctcccaacccgacaagcaggtcaagtgacaccccaagagtgggtgctgttagtggaa
aacatcaaagccacgctaaaaattgccattaaccaaggtggtacgactttaaaagacttc
gctcaagccgatggcaagccgggttattttgctcaagaacttttagtgtatggaaaagcg
ggtaagccttgcccagaatgtggagagccgcttcaagagctaaaaattggccaacgtaat
accttcttctgtaatgagtgtcagcaatag
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