Vibrio parahaemolyticus O1 K33 CDC_K4557: M636_22200
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Entry
M636_22200 CDS
T02760
Symbol
uvrD
Name
(GenBank) DNA-dependent helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
vpk
Vibrio parahaemolyticus O1:K33 CDC_K4557
Pathway
vpk03420
Nucleotide excision repair
vpk03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
vpk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
M636_22200 (uvrD)
03430 Mismatch repair
M636_22200 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vpk03400
]
M636_22200 (uvrD)
Enzymes [BR:
vpk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
M636_22200 (uvrD)
DNA repair and recombination proteins [BR:
vpk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
M636_22200 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
M636_22200 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PcrA_UvrD_tudor
UvrD_C_2
AAA_30
AAA_12
AAA_11
Motif
Other DBs
NCBI-ProteinID:
AGQ99641
LinkDB
All DBs
Position
I:2992858..2995032
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AA seq
724 aa
AA seq
DB search
MMDPSLLLDGLNDKQREAVAAPLENLLVLAGAGSGKTRVLVHRIAWLMSVEQASPFSIMS
VTFTNKAAAEMRGRIEELMMGSASGMWNGTFHGICHRILRAHYLDAKLPEDFQIIDSDDQ
QRLLKRLIKAQNLDEKQWPARQVAWWINGKKDEGLRPAHIDAYHDPVTKTYLQLYTAYQE
ACDRAGLVDFAEILLRAHELLRDNKFVREHYQARFKHILVDEFQDTNNIQYAWLRMMAGP
ECHVMIVGDDDQSIYGWRGAKVENIEKFTREFPSVTTIRLEQNYRSTKTILEASNTLIAN
NTERMGKELWTDGVVGEPISVYSAYNELDEARFAVNKIKEWQDKGGALNDAAMLYRNNAQ
SRVLEEALIQAGLPYRIYGGMRFFERQEIKDALSYMRLMANRNDDAAFERVVNTPTRGLG
DKTLETIRRAARDRGCTMWEASVAMLDEQVLAGRAAGALGRFIELITALEDDTLEMPLHE
QTDHVIKYSGLFAMYEQEKGEKSKARIENLEELVTATRQFEKPEEAEEMSLLTAFLTHAA
LEAGEGQADEFEDAVQLMTLHSAKGLEFPLVFMVGVEEGMFPSQMSAEEAGRLEEERRLC
YVGMTRAMQKLYITYAEMRRLYGQDKYHKPSRFIRELPETCLDEVRMKAQVSRPASSGRF
SQTAVKENFNETGFSLGSRVMHPKFGEGTIINFEGSGPQSRVQIAFNGEGIKWLVTAYAR
LERL
NT seq
2175 nt
NT seq
+upstream
nt +downstream
nt
atgatggatccatctctattactcgacggtttgaacgacaaacagcgtgaagccgttgca
gcacctctagaaaacttgctcgtccttgctggtgcagggagtggtaagactcgtgttctt
gttcaccgtatcgcttggttgatgtcggtagaacaagcgtctccgttctcaattatgtcg
gtaacctttaccaacaaagcggcggcggagatgcgtggccgtattgaagagttgatgatg
ggcagcgcgtcaggcatgtggaatggtacctttcacggtatttgtcaccgcattttgcgt
gcgcactatcttgatgccaagctaccggaagattttcaaatcatcgacagcgacgatcaa
caacgtttactgaagcgtctgatcaaagcacaaaatctggatgaaaagcagtggcctgca
cgccaagtggcttggtggattaacggcaaaaaagacgaaggcctgcgcccagcacatatc
gatgcttaccacgatcctgtgaccaaaacctacttgcagctatacaccgcttatcaagaa
gcgtgtgaccgtgcaggtttggtcgactttgcagaaattctgcttcgcgctcatgagcta
ctgcgcgataacaagtttgtccgcgagcactaccaggcacgctttaaacacattctggtt
gacgagttccaagacaccaacaatatccaatacgcttggctacgcatgatggcggggcct
gagtgtcatgtgatgattgtgggtgacgatgaccaatcgatttacggttggcgcggagca
aaagtcgaaaacattgagaaattcacccgtgaattcccaagcgtaaccaccattcgccta
gagcagaattaccgttccaccaagaccattttggaagcttccaataccttgatcgccaat
aacactgagcgtatgggtaaagagctgtggactgacggcgtcgttggtgagccgatttcg
gtttacagtgcttacaacgagttggacgaagcccgttttgcggttaacaaaatcaaagag
tggcaagacaaaggcggagcattgaatgatgcagcgatgttgtaccgcaacaacgcccag
tctcgtgtactggaagaagcgttgattcaagctggtctaccataccgtatttatggtggt
atgcgattcttcgagcgtcaggaaatcaaagacgcactgagttacatgcgtttgatggct
aaccgcaatgatgatgctgcatttgaacgtgtggtgaatacgccaactcgtggtttaggt
gacaagacactagaaaccattcgccgtgcggcgcgcgatcgtggttgcacgatgtgggaa
gccagcgttgcgatgttggatgaacaagtgctcgcgggtcgagccgctggggcattaggt
cgctttatcgaacttattaccgcactcgaagacgacacgttagagatgccgttgcacgag
caaacagaccatgtgatcaagtactctggcttgtttgccatgtatgagcaagagaagggc
gaaaagtctaaggctcgtattgagaacttggaggaattggtgaccgcaactcgccaattc
gagaagccagaagaagcggaagagatgtcgctgctgactgcgttcttgactcatgcggcg
ctagaagcgggtgaagggcaagccgacgaatttgaagatgcagttcaattgatgacactg
cacagtgcaaaaggcttggaattcccattggtgtttatggtgggcgttgaagaaggcatg
ttcccaagccagatgtcggcggaagaggcagggcgtttagaggaagagcgccgcctgtgc
tacgtcggtatgacgcgcgcgatgcaaaaactctacatcacttacgcggaaatgcgccgt
ttgtatggtcaagataagtaccataagccatcgcgttttattcgtgagttgccggaaacg
tgcctggacgaagtgcgtatgaaagcgcaagtcagccgacctgcaagcagtggtcgcttt
agccaaactgcagtgaaagagaacttcaacgagacgggcttttcacttggttcacgcgta
atgcatccaaagtttggcgaaggcaccatcattaactttgaaggcagcggtccacagagt
cgcgttcaaattgcgttcaatggtgaaggcattaaatggttagtgactgcttacgctaga
ctagagagactgtaa
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