Vibrio parahaemolyticus O1 K33 CDC_K4557: M636_22230
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Entry
M636_22230 CDS
T02760
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
vpk
Vibrio parahaemolyticus O1:K33 CDC_K4557
Pathway
vpk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vpk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
M636_22230
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vpk03019
]
M636_22230
03400 DNA repair and recombination proteins [BR:
vpk03400
]
M636_22230
Enzymes [BR:
vpk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
M636_22230
Messenger RNA biogenesis [BR:
vpk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
M636_22230
DNA repair and recombination proteins [BR:
vpk03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
M636_22230
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
zf-CXXC
Motif
Other DBs
NCBI-ProteinID:
AGQ99646
LinkDB
All DBs
Position
I:3000445..3002280
Genome browser
AA seq
611 aa
AA seq
DB search
MTSTLLAEQSDSPVTPQRVLEEVFGYQTFRDGQQEVIESAVEGKDSLVIMPTGGGKSLCY
QIPALVRNGITLVISPLISLMKDQVDQLKANGVAAECVNSTMSREELLSVYNRMHSGQLK
LVYVSPERVLMRDFIERLENLPLAMIAVDEAHCISQWGHDFRPEYAALGQLKQHFSHVPF
MALTATADDATRRDILERLRLHEPHVHLGSFDRPNIRYNLVEKHKPISQIIRYLDTQKGN
CGIIYCGSRKKVEMVTEKLCNNHIRAAGYHAGMDADERAYVQEAFQRDDIQIVVATVAFG
MGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMMLYDPADISWLRRMLDEKDD
GPQKQVESHKLNAMSAFAEAQTCRRQVLLNYFGEYREKPCGNCDICLDPPKHFDATEEAR
KALSCVYRVNQSFGMTYVVEVLRGMQNIRVREHGHDKISTYGIGRDHSHDYWVSIFRQLI
HKGLLFQNITRNSTLQLTEEARPLLRGDVSLELAVPRLDTAARAAKSDKLTSKNYDKKLF
AKLRKLRKSIADEDGLPPYVVFSDATLIDMAEILPTSYGEMLAVSGVGQRKLEKYADPFL
DLIQEHITHHG
NT seq
1836 nt
NT seq
+upstream
nt +downstream
nt
atgacctcaactttgttagccgaacaatcagactcacctgtaacgcctcaacgtgtgttg
gaggaagttttcggttatcaaacgtttcgtgatggccagcaagaggtcatcgaatcggcg
gtcgagggcaaagacagtctggtgatcatgccgacaggtggtggcaaatctctttgctat
cagatacctgcgttggttcgtaatggcatcaccttggtgatttcgccgctgatttctttg
atgaaagaccaggtcgatcagctcaaagccaacggcgttgcggcagagtgtgtgaactcc
accatgagtcgtgaagagctgctgagtgtgtataaccgcatgcacagcggtcaactcaaa
ttggtttacgtctcaccagaacgcgtgttaatgcgtgacttcatcgagcgactcgaaaac
ctgcctttggcgatgattgcggtggatgaagcgcactgtatctcgcagtggggacacgat
ttccgtcccgaatacgccgcgctgggtcagttaaagcagcatttttcgcatgtgccattt
atggcgctcaccgccactgcggatgacgctacacgtcgcgacattcttgaacgcttacgt
ttgcatgaacctcatgtccacttaggcagttttgaccgtccgaatatccgctacaacctg
gtcgagaagcacaagccgatttctcagatcattcgttatctcgacactcaaaagggcaat
tgcggcatcatttactgtggtagccgtaagaaagtcgaaatggtgacggagaagttgtgc
aacaaccacatccgtgcggcgggctatcatgcagggatggacgctgatgagcgtgcttac
gttcaagaggcgtttcagcgtgatgacattcaaatcgtggtcgcgacggttgcctttggt
atgggtatcaacaagccgaacgtccgttttgtggtgcactttgatattccgcgcaatatt
gaatcctactaccaagaaacgggacgagcagggcgagatggtttgcctgctgaagcgatg
atgttgtacgaccctgcagacatcagttggctacgtcgcatgctggatgaaaaagacgat
ggaccgcaaaagcaagtagaaagccataaacttaatgcgatgagtgcctttgcggaagcg
caaacctgtcgtcgtcaggttctgctcaactactttggtgaataccgcgagaagccttgt
ggtaactgcgatatctgcctcgatccacccaaacattttgatgcgacagaagaagcgcga
aaagcgttgtcgtgtgtttaccgcgttaaccaaagctttggtatgacgtatgtggttgag
gtgctgcgtggtatgcaaaatatccgcgtgcgtgaacatggccacgataagatctctaca
tacggcattggccgcgaccacagccatgattactgggtgagtatcttccgccagttaatc
cacaaaggactgttgtttcaaaacattactcgaaactcgacgttgcaattgaccgaggaa
gctcgaccattattgcgcggggatgtgtcgctcgagctagcggttcctcgtttggatacc
gcagcacgcgctgcgaagtcggacaaactgaccagcaaaaactacgataagaagctgttt
gcgaaattacgcaagctgcgtaagtcgattgctgatgaagatggcttaccaccatacgtt
gtatttagtgatgcgaccttgattgatatggcggagattctgccaacgtcgtatggcgaa
atgctggcggtgagcggggtaggtcaacgtaaattagaaaaatatgccgatccattcttg
gatctgattcaagaacacatcactcaccacggataa
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