Vibrio paracholerae: SA104470976_00295
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Entry
SA104470976_00295 CDS
T08432
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
vpl
Vibrio paracholerae
Pathway
vpl02020
Two-component system
vpl02040
Flagellar assembly
vpl05111
Biofilm formation - Vibrio cholerae
Brite
KEGG Orthology (KO) [BR:
vpl00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
SA104470976_00295
09140 Cellular Processes
09145 Cellular community - prokaryotes
05111 Biofilm formation - Vibrio cholerae
SA104470976_00295
09142 Cell motility
02040 Flagellar assembly
SA104470976_00295
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vpl03021
]
SA104470976_00295
Transcription machinery [BR:
vpl03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
SA104470976_00295
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
rve
HTH_21
Motif
Other DBs
NCBI-ProteinID:
SYZ80456
LinkDB
All DBs
Position
1:complement(296349..297812)
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AA seq
487 aa
AA seq
DB search
MKPSLQLKLGQQLAMTPQLQQAIRLLQLSTLDLQQEIQEALESNPLLEVEDNQDEAPSLD
SVRMTEESPREPEELYEPEPQDSSDLIEKSEISAELEMDTTWDEVYSANTGSTGLALDDD
APIYQGETTQTLQDYLHWQLDLTPFSDVDRTIAVALIDAIDDYGYLTVSLEDIQESLRSD
DIELDEIEAVRKRIQQFDPFGVASLNLQDCLLLQLNTYSSDTPWLEEAKLLLAKYIDDLG
NRDYKTILKETKLKEEDLREILQLIQQLDPRPGSRIAQDHAEYVIPDVSVYKEQGRWLVT
INPDSVPKLKINQQYADLMRGNNAESNYIRTNLQEAKWLIKSLESRNETLLKVAKCIVEH
QHDFFEYGEEAMKPMVLNDVAMAVEMHESTISRVTTQKYMHTPRGIFELKYFFSSHVSTD
NGGECSSTAIRALIKKLVAAESPAKPLSDSKIATLLADQGIQVARRTIAKYRESLGIAPS
SQRKRLL
NT seq
1464 nt
NT seq
+upstream
nt +downstream
nt
atgaaaccgtcattacagctcaagctaggtcaacagttagccatgactccgcagctccag
caggcgattcgtctgttgcagctttcgacgctggatctgcagcaagaaattcaggaagca
ttggaatctaaccccttgttagaggtggaagataaccaagacgaagcaccatcgcttgat
agcgtacgcatgacggaagaaagcccgcgcgagccagaagaactctacgaacctgaaccg
caggatagctcggatctgattgaaaaatcggaaatcagcgctgaattagagatggatacc
acttgggatgaagtctacagcgcgaataccggcagtacagggctggcactcgatgatgat
gcccccatctaccaaggcgaaaccacccaaaccctgcaagattatcttcactggcaactt
gatttaactccctttagcgatgtggatcgcaccattgccgtagcacttatcgatgctatc
gatgattacggttatttaactgtctcactagaggatatccaagagagcctgcgcagtgat
gacattgagttagatgagattgaagcggtacgtaaacgtattcagcagtttgacccattt
ggagtagcatcactcaatctacaggactgcttactactgcaactaaacacgtattcaagt
gacaccccttggctagaagaagccaaattactgctcgcaaaatacattgatgatttaggg
aatcgcgattacaaaaccattctgaaagagactaagctcaaagaagaggacttgcgcgag
atcctgcaactcatccaacagctcgatcctcgccccggcagtcgaattgctcaagatcac
gctgaatacgtcatacctgacgtgtcagtctataaagaacaaggtcgatggttggtcacc
atcaacccagatagtgtgcctaaactgaagatcaatcagcagtatgccgacctgatgcgc
ggtaataatgcggagagcaactacatccgtaccaatttgcaagaggcaaaatggctgatc
aaaagtttagaaagtagaaacgagacactgctcaaagttgccaagtgcatagttgaacac
caacacgatttcttcgagtatggagaagaggcgatgaagccgatggtgctcaacgatgtg
gcgatggcggtggaaatgcatgaatcgacgatttcgcgtgtcaccacccagaaatatatg
cataccccgcgcggcatttttgagttgaagtactttttctccagccacgtcagtactgac
aacggcggagagtgctcgtccactgcgatcagggcgctgatcaaaaaactggtggcggcg
gagagtccagccaaaccactcagtgacagcaagatcgcaaccctactcgctgaccaaggc
atccaagtcgcgcggcgaaccatcgccaaatatcgtgaatcacttggcattgccccatca
agtcagcgcaaacgcctgctatag
DBGET
integrated database retrieval system
