Vibrio paracholerae: SA104470976_00498
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Entry
SA104470976_00498 CDS
T08432
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V beta subunit
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
vpl
Vibrio paracholerae
Pathway
vpl03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vpl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
SA104470976_00498 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vpl03400
]
SA104470976_00498 (recB)
Enzymes [BR:
vpl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
SA104470976_00498 (recB)
DNA repair and recombination proteins [BR:
vpl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
SA104470976_00498 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
SLFN-g3_helicase
WHD_ORC2
AAA_11
AAA_25
AAA_12
Motif
Other DBs
NCBI-ProteinID:
SYZ80648
LinkDB
All DBs
Position
1:534121..537747
Genome browser
AA seq
1208 aa
AA seq
DB search
MSADSNKLAVTLDTLRFPLHGARLIEASAGTGKTYTIAGLYLRLVLGHGCAQTRHAHPLS
VDQILVVTFTEAATAELRDRIRRRLHDARLAFARGASDDPLLRSLLAEFTDHNLAVSLLL
SAERQMDEAAIFTIHGFCQRMLTQNAFESGSRFENEFVTDESRLKAQVVADYWRRQFYPL
PISLASEVRRLWPAPSALLAEIAGYLSGPPVKLTTPLMEGDLAALQQAQIARISEIKQHW
LVEREEIEPAVTGSDLHKNSQNALLRRLPILDTWAQSETQDLHVPSELEEFTQSGLLAKS
KKGNPPQLALFERIEAFLAEPVSLKTPLLVHAIHHCRHWLAKAKSTHHWLSFDDLLTQLS
AALDNDEQGLLGERIRTLYPVAMIDEFQDTDPLQYSIFSRLYLDYPQCGLLMIGDPKQAI
YAFRGADIFTYIKARNQVSAHYTLGTNWRSGAAMVAAVNQVFSSATHPFIYSDDIPFQPV
TASPGADKRHWALEGQLQPALTYWWPEDLDKPQSKTDYYAQMAEACAAQIQHILTASASG
AATFHRGEAIEAGDLAVLVRTGNEARMVRDALSQQGIASVYLSNRDSVFASDVAQDIERL
LLAVWQPEDERLLRAAIASNLFALTASELDALNNDENEWEQLIAEFRQYRRLWSERGVLP
MLRAVLTQRHIAERWLTESEGERWLTDYLHISELLQQATREIDSDQGLLRFLTQAMADAA
QGLGGSDEQIQRLESERRLVQIVTIHKSKGLEYPLVFLPFVMSYRESSEGKYYDAESATT
WVDLTGNEEALAKADQERLAEDLRLLYVALTRAVYGCFIGVAPLRNGNSSQEPTSAHRSA
MGFLLQDGQEGGIADLQQALLKQCENLPDVAQCPPPKRFEQAYQPPQLDERELTARELSQ
AIDRRWRVTSYSGLVMQSSHARHDPLQELPLLEVGGFDLDSAQERDGAALESVERSIFNF
PRGARPGTFLHSLFEEVDFQQSAHSEPNTKIILDLMESEQIETEWLPVLQQLVDTVLSTP
LDGKVLSLQKIMAAQRLTELEFLLPMEVLDAPTLNRITQRHDPLSAQAGDLGFHSVQGML
KGFIDLVFQYQGRYYVLDWKSNHLGDDPAAYHPQRLGSAMAEHRYDLQYQIYALALHRFL
RSRLAHYNYEQHFGGVFYLFLRGMDGRTDQGVFHTKPSLALLDELDGLIAGRELAQRASK
AGQMELDL
NT seq
3627 nt
NT seq
+upstream
nt +downstream
nt
atgagtgccgattcaaataagctggctgtcacgctcgatacgttgcgctttcccttgcat
ggagcgcggctgattgaagcttcggcaggcaccggaaaaacctacaccattgccggactc
tatctgcgtctggtgcttgggcatggctgcgcgcaaactcgccacgcgcatccactgagt
gtggatcaaattctggtggtgacttttaccgaagcggccaccgcagagctgcgtgaccgt
attcgtcgccgcttgcacgatgcgcgcctcgcctttgctcgcggagcgagtgacgatcca
ctgcttcgctccctgctggctgaatttaccgatcacaacttagccgtctctttgttgctg
agtgccgagcgacagatggatgaagcggccattttcaccatccacggtttttgccaacgc
atgctgacgcaaaatgcgtttgaatcgggcagtcgctttgaaaatgaattcgtcaccgat
gaaagtcgtctcaaagcgcaagtggtggccgattattggcgtagacagttctaccccttg
cccatttccctcgcgagcgaagtgcgccgcttatggccggcgccctctgcgctgttggct
gagattgccggttatctttccgggccgccagtcaaactgactacgcctttaatggaagga
gatttggccgcgctgcaacaagcgcagatagcgcgcatttccgagattaagcagcactgg
ttagtggagcgagaggagattgagcccgctgtaactggctctgacctgcacaaaaatagc
caaaatgcgctgctgcgccgtttgccgattctggatacttgggcgcaaagtgaaacgcaa
gatctgcacgtgccgtcagagcttgaagagttcacccaaagcgggttgcttgccaaatca
aagaaaggcaatccgccacaattagcgctgtttgaacgaatagaagcatttcttgctgag
cctgtgtcactcaaaacaccgcttttggtgcatgcgattcatcactgtcgtcactggttg
gcgaaagccaaatccacccatcattggctctcgtttgatgacttactgactcaactcagc
gctgcgctcgataatgatgagcaagggctattgggtgagcgaattcgtacgctgtatccg
gtggcgatgatcgacgaattccaagataccgatccgctgcagtacagcatttttagtcgg
ctgtatctggactatccgcagtgtggcttgttgatgatcggcgacccgaaacaggcgatt
tacgccttccgtggcgccgatattttcacttacatcaaagcgcgcaatcaggtgagcgct
cactacaccttaggcactaactggcgctccggcgcggctatggtggcggctgtgaatcaa
gtgttcagctctgccactcatccgtttatttacagtgatgacatcccctttcagcccgtg
acggcaagccctggtgccgataaacgccactgggcactggaagggcaactacaaccagcc
ttgacctattggtggccggaagatctcgataaaccacaaagcaaaaccgattactacgcg
caaatggctgaggcgtgtgcggcgcaaattcagcacattttgactgcttcggcctctggc
gcggcaacctttcatcgcggcgaggcgattgaagcgggcgatctggcggtgctggtgcgc
accggtaatgaagcacgcatggtgcgtgatgcgctcagtcagcaaggcatcgccagtgtt
tacctttccaaccgtgacagcgtgtttgccagcgatgtggcgcaagatattgaacgcttg
ctgctcgccgtgtggcagccagaagatgaacgcttgctccgtgcggccatcgcctcgaat
ctgttcgcgttaaccgccagcgagctggatgcgctgaataacgatgaaaacgaatgggaa
cagttgattgccgaatttcgtcaatatcgccgcttgtggagcgagcgtggcgtattgccg
atgctgcgtgcagtattaactcagcgccacattgccgaacgttggctgacggaaagtgaa
ggtgagcgctggctcaccgattatctgcacatcagcgaacttttgcagcaagcgacgcgt
gagatcgatagcgatcagggcttactgcgttttctgactcaggcgatggcggatgctgcg
caagggctcgggggcagtgatgagcagatccagcgtctcgaatctgagcggcgtttggtg
cagattgtcaccattcacaaatcaaaagggcttgagtacccgctggtgtttttgccgttt
gtgatgagctatcgcgagagcagcgaaggcaaatattacgatgctgaatcggccactact
tgggtcgatttaaccggtaatgaagaggcgttagctaaagccgatcaagaacgtttggca
gaagatttacgcttgctgtatgtggcgctcactcgcgctgtgtatggctgttttatcggt
gttgcgccgctgcgcaacggtaattcgagccaagagccgacctcggcgcatcgcagtgcg
atggggtttctgctgcaagatggtcaagagggtggtatcgcggatctgcagcaagcgctg
cttaaacagtgtgaaaacttaccggatgtcgcgcaatgcccgccaccgaagcgtttcgaa
caagcgtatcagccaccccaattggacgagcgagagctgactgcccgtgagttaagccaa
gcgattgatcgccgctggcgagtgaccagttactcaggcttggtgatgcaatcaagtcat
gctcgccatgatcctttgcaagagttgcccttgcttgaagtaggcggttttgatcttgat
agtgcgcaagagcgtgatggagcggcgctggaatctgtcgagcgctcgattttcaatttc
ccgcgtggcgcacgtcctggcactttcttgcattcgctgtttgaagaggtggatttccag
caatcggcgcacagtgaacccaatactaaaatcatccttgatttgatggaaagtgagcag
attgaaaccgagtggctgccggtgttgcaacagttggttgacaccgtattgagcactcca
ctggatggtaaagtgctgagtttacaaaagattatggccgcccagcgcctgaccgagttg
gaatttttattgccaatggaagtgttggatgcaccaaccttaaatcgcatcacccagcgc
catgatccgctttcggcacaggcgggcgatctcggttttcactcggtacaaggcatgctc
aaaggttttatcgatctggtgtttcaatatcaagggcgctattacgtgctggactggaaa
tccaaccatttgggggacgatccagcggcgtatcatccacagcgtttgggcagtgcgatg
gctgagcaccgttacgatctgcaataccaaatttacgcgttagcgctgcatcgctttttg
cgcagccgtttagcccattacaattacgagcagcatttcggcggcgtgttttatctcttc
ttacgtgggatggatgggcgcaccgatcaaggtgtgtttcataccaagccaagcttggcc
ttgctagatgagttggatggattgattgcagggcgtgaattggcacaaagagcgagtaaa
gctgggcagatggagcttgatttatga
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integrated database retrieval system
