Vibrio paracholerae: SA104470976_00567
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Entry
SA104470976_00567 CDS
T08432
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
vpl
Vibrio paracholerae
Pathway
vpl03030
DNA replication
vpl03430
Mismatch repair
vpl03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vpl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SA104470976_00567 (dnaE)
03430 Mismatch repair
SA104470976_00567 (dnaE)
03440 Homologous recombination
SA104470976_00567 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vpl03032
]
SA104470976_00567 (dnaE)
03400 DNA repair and recombination proteins [BR:
vpl03400
]
SA104470976_00567 (dnaE)
Enzymes [BR:
vpl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
SA104470976_00567 (dnaE)
DNA replication proteins [BR:
vpl03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
SA104470976_00567 (dnaE)
DNA repair and recombination proteins [BR:
vpl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
SA104470976_00567 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
SYZ80716
LinkDB
All DBs
Position
1:605306..608785
Genome browser
AA seq
1159 aa
AA seq
DB search
MSDPKFIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNC
GVKPIIGADFTLQSEEFGDELTKLTLLAKNNIGYKNLTLLISKAYLRGHVQHQPVIDKAW
LVEHAEGLIVLSGGKSGEVGRALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEES
YLHFALDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYL
RSEAEMCELFADIPEALANSVEIAKRCNVTVRLGEYFLPNFPTGGMAIEDFLVMKSREGL
EERLEFLFPDPEVRAKRRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGP
GRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAE
MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDPGMTLEKAFIAEPA
LQELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAITDFAPIYCDAEGNFPVTQ
FDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKAGKPPIRIEAIPLDDARSFRNL
QDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGREA
ISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEM
AKQRAVFQEGAENNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHYPA
EFMAAVMTADMDNTEKVVGLVDECKNMGLTVLPPDINSGLYRFNVDDNGAIVYGIGAIKG
VGEGPIEAILEARNKGGYFKDLFDFCARIDLKKVNKRVIEKLILAGALDRLGPHRAAMMA
SVDDAVRAASQYHQAEAFGQADMFGVLTDAPEEVEQKYTQVPEWPEKVRLEGERETLGLY
LTGHPVDEYLKELTKYTSCRLNEAAPTRRDQSLTVAGLVIAARVMTTKRGTRIGLMTLDD
RSGRMEVMLYSEALDRYAEWLEKDKILVVSGQVSFDDFNGGLKMSAREVMDLGSAREKFA
RGLSISILQSQIDQQFFERFSHILEPHRAGTVPVNVYYQRPDARARLTLGTEWRVTPSDT
LLDELKQLLGKDQVELEFN
NT seq
3480 nt
NT seq
+upstream
nt +downstream
nt
atgtcagacccaaagttcatccacttacgtatacacagtgatttctctatggtggatggt
ttgtccaaagtcccgccattggtgaaaaaagtggcggcaatgggcatgcccgcaatggcc
ttgaccgatttcaccaacctgtgtggcttggtgaagttttacagcaccgcgcataactgc
ggggttaagccgatcattggtgccgactttactttgcaatcggaagagttcggtgatgag
ctgaccaaactgaccttgcttgctaaaaataatatcggttacaaaaacctcaccttattg
atttctaaagcctatttgcgcggccatgtccagcatcaacctgtgattgataaagcgtgg
ttggtcgagcatgccgaagggctgattgtgctctcggggggtaaaagtggcgaagtgggg
cgcgcattactcaaaggcaaccagcaacaagtagaaagatgcattgagttttaccaaact
cactttgccgatcatttctatctagagcttatccgcactggccgtgccgatgaagagagc
tacttacattttgcgctagatgtggctgagcagtacgacttgcccgtcgtggcaaccaac
gaagtggtgttcatcactgaagagtcgtttgaagcccacgaaatccgagtcgcgattcac
gatggttatacgctggaagatccacgccgcccgaaaaattatagcccgaagcagtatctg
cgtagcgaagcagagatgtgtgagctgtttgcggacatcccagaagcgttagccaacagt
gtcgagattgccaaacgttgtaacgtgaccgtacgtttgggcgaatatttcctacctaac
ttcccaactggcgggatggcgattgaagatttcctagtgatgaaatctcgcgaagggttg
gaagagcgactcgaatttcttttcccagatccagaagtgcgtgccaagcgtcgccctgaa
tatgatgagcgtttgcaagttgagctcgatgtaattaaccagatgggctttcccggctac
ttcttgatcgtgatggagtttatccagtggtcaaaagataacgatattccagtcggtccg
ggacggggctcgggtgcgggctcattggtagcgtatgcactgaaaatcaccgaccttgat
ccgctggaatacgatctgctgttcgagcgtttcttgaacccagagcgggtctccatgccc
gacttcgacgtcgatttctgtatggataagcgtgaccaagtaattgatcacgtagctgaa
atgtatggtcgtgatgcggtatcacaaatcatcactttcggtaccatggccgccaaagcg
gtcatccgcgatgtggggcgcgtgcttgggcatccgttcggttttgtcgatcgtatttcc
aaattagtgccacccgatccgggcatgacgctcgagaaagcctttatcgccgagcctgca
ctgcaagagctgtatgacgcggatgaggaagtcaaagagctgatcgacaagtgtcgtatt
ctggagggctgtacccgtaacgccggcaagcacgcggggggcgtggtgatttcacccacc
gccatcactgattttgcgccgatttactgtgatgccgaaggtaacttcccggttactcag
ttcgataaaaacgatgtagaaaccgctggtctggtcaaatttgacttcttggggctgcgt
acgctcaccattattgactgggctttgggcttagtgaacccacgcttgaaaaaggcgggc
aaaccaccaattcggatagaggcgatcccgctcgacgatgcgcgctctttccgtaaccta
caagatgccaaaaccaccgcagtattccagctcgaatcgcgcggtatgaaagagctgatt
aagcgactgcaacccgactgttttgaagacatcatcgctctggtggcgctgtttcgtccg
gggccgctgcaatcgggcatggtggataactttatcgaccgtaagcatggccgagaagcc
atctcttatccggatgaaaagtggcaacatgaatcgctcaaagagatcctagagccgacc
tacggcatcatcctctatcaggagcaggtgatgcagatcgcgcaggtactgtcgggttac
accttgggtggtgcagacatgctgcgccgtgcaatgggtaagaaaaagccagaagagatg
gctaaacagcgcgccgtgttccaagaaggggcagaaaataacggcgttgatggtgagttg
gcgatgaaaatcttcgatctggtggaaaaattcgccggatacggatttaacaaatcgcac
tctgccgcttatgcgttggtttcttaccaaaccttatggttgaaaacccactatcccgcc
gagtttatggcggcggtaatgaccgcggatatggacaacacggaaaaagtggttggccta
gtggatgagtgtaaaaacatgggattgaccgtgttaccaccggacatcaactcgggtctt
tatcgctttaacgtcgatgacaatggcgcgattgtttatggtatcggcgcaattaaaggg
gtgggtgaaggcccgattgaagcgattttggaagctcgcaacaaagggggatatttcaaa
gatctgtttgatttctgcgcgcggattgatctgaaaaaggtcaacaaacgggtaattgaa
aaactgatcttggctggtgcgctggatagattgggcccacatcgcgcagccatgatggcc
tcagtggatgatgcggtgcgtgcggcaagccaatatcaccaagcggaagcgtttggacaa
gcggatatgttcggcgtactcacggatgcgccagaagaagtcgagcagaaatacacgcaa
gtgccagaatggccagaaaaagtgcgtttggaaggggagcgcgagacgcttgggctctat
ctcaccggccatccggtggatgaatacctgaaagagctcacaaaatacaccagttgccgt
ttgaatgaagccgcgccaacccggcgtgatcaatccttaaccgttgccggattggtgatt
gctgcgcgggtgatgaccaccaaacgtggcacgcgaattggtttaatgactttagatgac
cgctcgggccgtatggaagtgatgctttactcggaagctctcgatcggtatgcagaatgg
ttagaaaaagataaaattctggtggtttccggacaggtcagctttgatgacttcaatggc
ggacttaaaatgtcggcgcgcgaggtcatggacttgggcagcgcgcgtgaaaaatttgcc
cgcggtttatcgatctcgattttacagtcgcagattgatcaacaattttttgagcgtttt
agtcacatactggaacctcaccgcgcaggaaccgtacctgtcaatgtatactaccagcgc
cctgatgcgcgagcgcgcctgacgttaggcacagagtggcgagtcacgccaagcgataca
ttgttagacgaattaaagcagctacttggtaaagatcaggtagaactcgaatttaactaa
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