Vibrio paracholerae: SA104470976_00983
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Entry
SA104470976_00983 CDS
T08432
Symbol
sbcB
Name
(GenBank) exonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
vpl
Vibrio paracholerae
Pathway
vpl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
vpl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
SA104470976_00983 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vpl03400
]
SA104470976_00983 (sbcB)
Enzymes [BR:
vpl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
SA104470976_00983 (sbcB)
DNA repair and recombination proteins [BR:
vpl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
SA104470976_00983 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
SA104470976_00983 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
SA104470976_00983 (sbcB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ExoI_SH3
ExoI_C
RNase_T
Motif
Other DBs
NCBI-ProteinID:
SYZ81103
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All DBs
Position
1:complement(1030833..1032257)
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AA seq
474 aa
AA seq
DB search
MQQEHQPTFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPE
AALITGITPQKANIQGLAEPEFIARIHAELSTPNTTSLGYNSIRFDDEVTRYTCYRNFID
PYAWSWQHGNSRWDLLDVLRACHALRPEGIEWPENDDGFTSFKLEHLSVANGIEHSNAHD
AMADVIATIELAKKVKAAQPKLFDYFFTMRHKRKLTELIDIVNQTPLMHVSGMLGRERHY
TSWIVPIAWHPTNQNAVIVVDLGKDPQPLLELDAETLQARLYTRYEDLAPDELPVPVKLV
HLNKCPILAPAKTLTAENAQKIGIDREQCLAHLNVIRQHPEIREKLVTVFSQEREFNQES
DVDSQLYAGFFSPADRAAMEIIRTTAPENLGSLAIQVADKRIEPLLFRYRARHYPHTLTD
TEQRRWAAHCRDYFERNLEGYMLNLENLVHEHQADPKKMAILKSVYRYVEKLAC
NT seq
1425 nt
NT seq
+upstream
nt +downstream
nt
atgcagcaagaacaccagcccacattcttcttctttgactacgagacttggggagtcaat
cccgccaaagatcgtcctagtcagtttgcgggtgtgcgtaccgatatggacttcaacatc
atcggtgagcctttggtgatttactgtcaactgcccaacgactatttacctgctcctgaa
gccgcattgatcacagggatcacccctcaaaaagccaatatccaaggtctggcggagccc
gaatttatcgcgcgtattcatgctgagctctccacacccaataccaccagcctaggttat
aacagcatacgttttgatgatgaagtgacgcgctacacctgttatcgcaactttatcgac
ccctatgcttggagctggcagcacggtaattcccgttgggatctgctggatgtgcttcgc
gcgtgtcatgctttgcgtcctgaaggtatcgagtggccggaaaatgatgacggcttcacc
agctttaaactggaacatctttctgttgccaacggcattgagcacagcaacgcgcacgat
gcgatggccgatgtgattgccaccattgaactggcgaaaaaagtcaaagccgcgcagccg
aaattgttcgactacttcttcactatgcgccacaaacgcaagctgacagaactgattgat
attgtgaaccaaactccgctgatgcatgtttctggcatgcttgggcgtgagcgccactac
accagctggattgtgccgattgcttggcatccgaccaatcaaaatgcggtgattgtggtg
gatttgggtaaagaccctcagccgctgctggagctcgatgccgaaacgctgcaagcacgt
ctctatacgcggtatgaagacctagcgccggatgagctaccagtacccgtgaaattggtg
catctcaataaatgtcctattctggctccggccaaaaccttgaccgcagaaaatgcacaa
aagattggtattgaccgcgaacagtgtctcgcgcacttgaatgtgattcgccaacaccca
gagattcgtgaaaagctggtgacggtatttagccaagagcgcgaatttaaccaagaaagt
gatgtggatagccaactctatgccggttttttctccccagccgatcgtgcggcaatggag
atcatccgcaccactgcaccggagaatctgggcagcttagcgatacaggtggccgataag
cgcattgaaccactgctgtttcgttatcgtgcgcgccattatccccataccttaaccgat
accgagcaacgccgctgggcagcgcattgccgtgactatttcgagcgcaatctagaaggt
tatatgttgaatttggaaaatctggtgcatgaacatcaagctgatccaaagaaaatggcg
attttaaaatccgtctaccgttacgtggaaaaactcgcttgctaa
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