Vibrio paracholerae: SA104470976_01687
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Entry
SA104470976_01687 CDS
T08432
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
vpl
Vibrio paracholerae
Brite
KEGG Orthology (KO) [BR:
vpl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
vpl03016
]
SA104470976_01687 (rnd)
Enzymes [BR:
vpl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
SA104470976_01687 (rnd)
Transfer RNA biogenesis [BR:
vpl03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
SA104470976_01687 (rnd)
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Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNAseD_HRDC_C
HRDC
Motif
Other DBs
NCBI-ProteinID:
SYZ81796
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All DBs
Position
1:complement(1837483..1838604)
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AA seq
373 aa
AA seq
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MNYQIISQLGDLQRVCLAARDADVVMLDTEFVRTRTFFPQLGLIQMFDGENLSLIDPTLL
DEMTPFVELLQDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQIMAAFLGYGLSTGFAA
LVQDQLQVELDKSESRTDWLARPLSDKQLEYAAADVFYLLPMYEKLVERVTQAGWWEAAL
QESELQVAKRTKVSNPELAYLDIKGAWQLKPKELAILKPLATWRYHEAVNRDLALNFVIK
ETDLLTISRLALRSPKRMEEEGIDPHAIRRHSSKIITMVKAALEIPADAYPPEIVPIMEY
PGYKQLFKRLKDEVKSVSNTSGLATEFLASKKQLNQLLSWVWKRDRDPARLPDLMQGWRL
PLLGEKLNTLVSK
NT seq
1122 nt
NT seq
+upstream
nt +downstream
nt
gtgaattatcaaattattagccaacttggcgatctacaacgagtctgtcttgctgcccgt
gatgcggatgtggtgatgctggataccgaatttgtccgcacccgcaccttctttccgcaa
ctggggttgatccagatgtttgatggggaaaacctgtcactgattgatccaaccctgctg
gatgaaatgacgccgtttgtcgagttattgcaagacacttcggtattgaaagtgctgcac
gcctgtggcgaagatttggaagtgttccagaatgcgtttggctgcacgcctttccctatg
gtggatacccaaatcatggctgcatttttaggttatggtttatccactgggtttgcggcg
ttagtgcaagaccaattgcaagtggagttagacaaaagcgaatcgcgtaccgattggtta
gcgcgccctctgagtgacaagcaactggaatatgccgcggccgatgtgttctatctgctg
ccgatgtacgaaaaactggtcgagcgagtgacccaagccggctggtgggaagcggcattg
caagagagtgaactgcaagtcgccaagcgcactaaagtcagcaaccctgagctcgcttac
ttagacattaaaggggcttggcagcttaagcctaaagagctggcgatcctcaaaccgtta
gcaacatggcgttaccatgaagccgttaaccgagatttggcgctcaacttcgtgattaaa
gaaacggacttactgaccatttcgcgtttggcgctacgcagtccgaaacgcatggaagaa
gaggggatcgacccgcatgcgattcgccggcacagcagcaaaatcattaccatggtgaag
gctgcgctggaaatccctgccgatgcgtacccgccagaaatcgtgcctatcatggaatac
ccaggttacaagcagctgtttaagcgtctaaaagatgaagtgaagagcgtttcgaacacc
agtggcctcgcgactgaatttctggcctcgaaaaagcagcttaaccaactgctgagttgg
gtatggaagcgcgatcgcgacccagctcgcttgccagatttaatgcaagggtggcgtttg
ccactactgggtgaaaagcttaatacgctcgtctcgaaataa
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