Vibrio paracholerae: SA104470976_02395
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Entry
SA104470976_02395 CDS
T08432
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
vpl
Vibrio paracholerae
Pathway
vpl03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
vpl00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SA104470976_02395 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vpl03021
]
SA104470976_02395 (rpoC)
03400 DNA repair and recombination proteins [BR:
vpl03400
]
SA104470976_02395 (rpoC)
Enzymes [BR:
vpl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SA104470976_02395 (rpoC)
Transcription machinery [BR:
vpl03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SA104470976_02395 (rpoC)
DNA repair and recombination proteins [BR:
vpl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SA104470976_02395 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Apocytochr_F_C
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
SYZ82451
LinkDB
All DBs
Position
1:complement(2582776..2586981)
Genome browser
AA seq
1401 aa
AA seq
DB search
MKDLLNFLKAQHKTEEFDAIKIGLASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRDRMGHIELASPVAHIWFLKSL
PSRIGLLMDMPLRDIERVLCFEMYVVTEPGMTDLERGQMLTEEEYLDRLEEWGDEFTAKM
GAEAIKDLLASMDLPAEAEQMREELDTTNSETKRKKLTKRLKLVEAFVASGNKPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELAAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYSKLETRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RTLMMSTNNILSPASGDPIIVPSQDVVLGLYYMTREKINAKGEGMYLTGPAEAEKAYRTK
TAELHARVKVRITETIKHENGKLTTETKMIDTTVGRAMLWQIVPKGLPYSLVNQKLGKKQ
ISNLLNEAYRKLGLKDTVVFADQIMYTGFAYAALSGVSVGIDDMVVPAAKYTEIAEAEEE
VREIQEQFQSGLVTAGERYNKVIDIWASTNDRVAKAMMENLSSEQVINRQGEQEKQESFN
SIYMMADSGARGSAAQIRQLAGMRGLMARPDGSIIETPITANFKEGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDVVVTEHDCGTLEGVVMTPHIEGGDVKVALTELAL
GRVVAEDILKPGTDEVLIPRNTLLDEKWCKVINDNSVDQIQVRSVVTCDSDFGCCAQCYG
RDLARGHLVNQGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASTAAAENSIQAKNNGSVKL
HNAKFVINKDGKLVITSRASELTIIDEFGRTKEKHKLPYGSTLSKADSDAVAAGETVANW
EAHTMPIITEVAGRVQFVDMIDGVTVSRQTDDLTGLSSSEVTEAAARPAAGKDMRPAIKL
VDANGKDVLIPGTDMPAQYFLPGKAIVNLDDGAEVNVGDTLARIPQKSGGNKDITGGLPR
VADLFEARKPKEPAILAEHSGTVSFGKETKGKRRLIITRDSGDTYEEMIPKHRQLNVFEG
ERIERGDVIADGPESPHDILRLRGIHAVTTYIANEVQEVYRLQGVKINDKHIETIVRQML
RKCTITFAGDSEFLPGETVEYSQVKIANRKLVDEGKEPARFERELLGITKASLATESFIS
AASFQETTRVLTEAAVSGKRDDLRGLKENVIVGRLIPAGTGFAYHQDRQAKRAQQQQGPS
AEQATDNLAALLNAGFSSDDE
NT seq
4206 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattaaactttctaaaagcacagcataagaccgaagaatttgatgcgatc
aaaatcggtctggcttcaccagacatgatccgttcatggtcttttggtgaagtgaaaaaa
cctgaaaccatcaactatcgtacgttcaaacctgagcgtgatggtctgttctgtgcgcgt
atttttggcccggtaaaagactacgaatgtctttgtggcaaatataagcgtctgaaacac
cgtggtgtgatttgtgagaagtgtggcgttgaagtcacccaaactaaagttcgtcgtgac
cgtatgggccacatcgaactggcttctccagttgcgcacatctggttcctgaagtctctg
ccatctcgtatcggtctactgatggacatgcctctgcgtgacatcgaacgcgtactgtgc
tttgaaatgtacgtagtgactgagccaggcatgactgaccttgaacgtggtcaaatgctg
actgaggaagagtacctcgaccgtttggaagagtggggcgatgagttcaccgcgaaaatg
ggtgctgaagcgatcaaagatctgctggcatcgatggatctgcctgcagaagcagagcag
atgcgcgaagagctggataccactaactctgaaaccaaacgtaagaaactgactaagcgt
ctgaagctggttgaagcgttcgttgcatcaggtaacaaacctgaatggatgatcctgact
gtactaccagttctgccgcctgatctacgtccattggttccactggatggcggtcgtttc
gcaacgtcggatctgaacgatctgtaccgtcgcgtcatcaaccgtaacaaccgtttgaag
cgtctgcttgaactggcggcaccagacatcatcgtacgtaacgaaaaacgtatgctgcaa
gagtctgtggatgcgctgctggataacggccgtcgtggtcgtgcgatcacgggctcgaac
aagcgtccgctgaagtctctggctgacatgatcaaaggtaagcaaggtcgtttccgtcag
aacctgctgggtaaacgtgttgactactcaggccgttcggttatcaccgtaggtccatac
ctgcgtctgcaccagtgtggtctaccgaagaaaatggctcttgagctgttcaaaccattc
atctacagcaagctggaaactcgtggcctagcaacgacgatcaaagcggctaagaaaatg
gttgagcgcgaagaagcggtcgtatgggatatcttggatgaagtgatccgcgaacaccca
gtgctgctgaaccgtgcaccaacacttcaccgtttgggtatccaagcgtttgaaccggtt
ctgatcgaaggtaaagcgatccaactgcacccattggtgtgtgcggcgtataacgcggac
ttcgacggtgaccaaatggcggtacacgttcctctgacgcttgaagcgcagttggaagct
cgtaccctgatgatgtcaaccaacaacattctgtcgccagcgtcaggtgatccaattatc
gtaccgtctcaggacgtggtactgggtctgtactacatgacccgtgaaaagatcaatgcg
aaaggcgaaggtatgtacctgactggccctgctgaggctgagaaggcgtatcgtactaag
actgctgagctgcatgctcgcgttaaagtacgtattaccgaaaccatcaagcatgaaaac
ggtaagttgaccactgaaactaagatgatcgacacgaccgttggccgtgccatgttgtgg
caaatcgtaccgaaaggtctgccatacagcttggtgaaccagaagctaggtaagaagcaa
atttctaacctgctcaacgaggcataccgtaagctgggtctgaaagacactgttgttttc
gctgaccaaatcatgtacaccggcttcgcatacgcggcactgtctggtgtatcggttggt
atcgacgatatggttgtacctgcggctaaatacactgaaattgctgaagcggaagaagaa
gtacgcgaaattcaagagcagttccagtctggtctggtgaccgctggcgaacgctacaac
aaagtgatcgatatttgggcatcaaccaacgatcgcgtagcgaaagcgatgatggaaaac
ctctcttctgagcaggtgattaaccgtcaaggcgaacaagaaaaacaagagtcgttcaac
agcatctatatgatggccgactcaggtgctcgtggttctgctgctcagatccgtcagttg
gcgggtatgcgtggtctgatggcgcgtccagatggctcgatcatcgaaacgccaatcacg
gcaaactttaaagaaggtctaaacgttcttcagtactttatctcaacgcacggtgctcgt
aagggtctggcggatacggcactgaaaacagcgaactcgggttacctgactcgtcgtttg
gtagacgttgcgcaagacgttgtagttacagaacacgactgtggcaccttagaaggcgtt
gtgatgacaccgcacatcgaaggtggtgacgttaaagttgcgttgactgagctagctctg
ggccgtgtggttgcggaagatatcctcaaaccaggtacagatgaagtactgatcccacgt
aatacactgctggatgaaaagtggtgtaaggtgatcaacgataactctgttgaccaaatc
caagtacgctccgtggtaacttgtgactctgacttcggttgttgtgcgcagtgttacggt
cgtgaccttgcacgtggtcacttggtgaaccaaggtgaagcggttggtgttatcgcggca
cagtcaatcggtgaacctggaacacagttgacgatgcgtacgttccacatcggtggtgcg
gcatcaacagcagcagcagaaaacagcatccaagcgaaaaacaacggttctgtgaaactg
cacaatgcgaagttcgtaatcaacaaagatggcaaactcgttatcacttctcgtgcttct
gagctgactatcattgacgaatttggtcgtaccaaagagaaacacaaactgccatacggt
tctacgctaagcaaagccgatagcgatgcagttgcagcgggtgaaactgttgcaaactgg
gaagcgcatactatgccaatcatcactgaagtggctggtcgcgtacagtttgtggatatg
atcgatggcgtaaccgtttctcgtcaaactgacgatctgaccggtctgtcgtcaagtgaa
gtgactgaagccgcagcgcgtcctgcagcaggtaaagatatgcgtccagccattaagctg
gttgacgcaaatggtaaagatgtcctgatcccaggtactgatatgccagctcaatacttc
ctgccaggtaaagcgattgtgaacttggacgacggcgctgaagtgaatgtgggtgataca
ctggctcgtattcctcagaagtctggcggtaacaaggacatcaccggtggtctaccacgc
gttgctgacctgtttgaagcgcgtaagccaaaagagcctgcgattctggctgagcactca
ggtaccgtatcgttcggtaaagagactaaaggtaagcgtcgtttgatcatcactcgtgac
agtggtgacacttacgaagagatgatccctaaacatcgtcaattgaacgtgtttgaaggt
gagcgcattgagcgtggtgatgtgattgcggacggcccagagtcgccacatgacattctg
cgtctgcgtggtatccatgcagtgactacttacatcgcgaacgaagttcaggaagtttac
cgtctacaaggcgttaagattaacgataagcacatcgagactatcgttcgtcaaatgctg
cgtaagtgtacgatcaccttcgcgggtgactcagagttcttgcctggcgagacagttgag
tactcacaagttaagatcgcgaaccgtaaactggttgatgaaggtaaagagcctgctcgt
ttcgagcgtgagctgctgggtattaccaaagcatctcttgcgacagaatccttcatttct
gcagcatcgttccaagaaaccactcgtgttctaacggaagcagcggtatctggtaagcgt
gatgatctgcgtggtctgaaagagaacgttatcgttggccgtctgatcccggcaggtaca
ggttttgcgtaccaccaagatcgtcaagctaaacgtgcgcaacaacagcaaggtccttcg
gctgaacaagccactgataacctcgctgcactgctgaacgcaggtttctcttctgacgac
gagtaa
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integrated database retrieval system
