Vibrio paracholerae: SA104470976_02425
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Entry
SA104470976_02425 CDS
T08432
Symbol
rhlB
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
vpl
Vibrio paracholerae
Pathway
vpl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vpl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SA104470976_02425 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vpl03019
]
SA104470976_02425 (rhlB)
Enzymes [BR:
vpl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SA104470976_02425 (rhlB)
Messenger RNA biogenesis [BR:
vpl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SA104470976_02425 (rhlB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
CMS1
SNF2-rel_dom
Motif
Other DBs
NCBI-ProteinID:
SYZ82470
LinkDB
All DBs
Position
1:2613946..2615259
Genome browser
AA seq
437 aa
AA seq
DB search
MKKTHITEHKFADFGLQPQIIDGLEKKGFVYCTPIQALALPVLLSGQDIAGQAQTGTGKT
LAFLTATFNHLLTTPAAEGRAETQPRAIIMAPTRELAIQIFNDAEPLLASTGLKAALAYG
GESYDKQLAKLQSGVDILIGTTGRIIDFYKQRVFNLNHIQAVVLDEADRMFDLGFIKDIR
FLFRRMPEPKDRLNMLFSATLSYRVQELAFEHMNNPEHVVVEPEQKTGHRIQEELFYPSN
EHKMALLQTLIEEEWPDRAIIFANTKHRCEQIWAHLAGDNHRVGLLTGDVPQKKRERILE
QFTQGDVDILVATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFA
CEEYAINLPAIESYIEHAIPTSDYDPSALLTDLPAPLSLRSSPQQRRTNTVGSRNNNGGN
RKPQQRRPRAPRPKKEA
NT seq
1314 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaagacgcatatcacagagcataagttcgctgactttggtttacagcctcaaatt
attgatgggctggaaaaaaaggggtttgtttactgcacccctatccaagcattggcgttg
ccggtactgctctccggccaagacatcgcaggccaggcccaaacagggactggtaaaacg
ctcgcgtttctcactgctacctttaaccatttattgaccacgccagcggctgaaggccga
gcggaaactcagccgcgcgccattattatggccccgactcgcgaactggcaattcagatc
tttaatgatgcagaacctttgttggcttcgaccggtctgaaagccgctttggcttacggt
ggcgaaagctatgataagcaactcgcaaaactgcaaagcggcgtggatattctgatcggc
actaccggacgaattatcgatttctacaaacagcgtgtattcaacctcaatcacattcaa
gctgtagtactggatgaagcggatcgcatgtttgatctcggctttattaaagacattcgc
ttcttgttccgccgtatgccagagcccaaagatcgtctcaacatgctgttctctgccacc
ctctcttaccgcgtgcaagagctagcttttgaacacatgaacaatcctgaacatgtggtg
gtagagcctgagcaaaaaactggtcatcgcattcaagaagagctgttctacccgtcaaat
gaacataagatggcgctgctacagactctgatcgaggaagagtggccagatcgcgcaatc
atttttgctaacaccaagcaccgctgtgaacagatttgggcacatttagcgggcgataac
caccgtgttggtctactgaccggtgatgtaccacagaaaaaacgtgaacgtattttagag
cagttcacccaaggtgatgtggacattctggtcgcgaccgacgttgcggcgcgcggcttg
cacattcctcaagtgacccacgtgtttaactacgatttgcctgacgattgtgaagactat
gtacaccgtattggtcgtactggtcgtgcgggcgcgagtggtcactcgataagctttgcg
tgtgaagagtacgcgattaatttgccggctatcgaaagctacattgagcatgcgattcca
acctcagactacgacccttcggctctgctgactgacctacctgcgcctctgagcctacgt
tcgtcaccgcaacaacgccgtacaaataccgtaggttctcgcaataataatggtggcaat
cgtaaacctcagcaacgccgcccacgcgcaccacgtccaaaaaaggaagcctga
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