Vibrio paracholerae: SA104470976_02552
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Entry
SA104470976_02552 CDS
T08432
Symbol
uvrD
Name
(GenBank) DNA-dependent helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
vpl
Vibrio paracholerae
Pathway
vpl03420
Nucleotide excision repair
vpl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
vpl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SA104470976_02552 (uvrD)
03430 Mismatch repair
SA104470976_02552 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vpl03400
]
SA104470976_02552 (uvrD)
Enzymes [BR:
vpl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SA104470976_02552 (uvrD)
DNA repair and recombination proteins [BR:
vpl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SA104470976_02552 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
SA104470976_02552 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PcrA_UvrD_tudor
UvrD_C_2
AAA_30
AAA_12
AAA_11
Speriolin_C
Motif
Other DBs
NCBI-ProteinID:
SYZ82596
LinkDB
All DBs
Position
1:complement(2757236..2759407)
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AA seq
723 aa
AA seq
DB search
MIDPSLLLDGLNDKQREAVAAPLENLLILAGAGSGKTRVLVHRIAWLMSVEEASPFSVMA
VTFTNKAAAEMRGRIEELMHGTASGMWCGTFHGICHRILRAHYLDAKLLEDFQIIDSDDQ
QRLLKRLIKAHNLDDKQWPARQVAWWINNQKDEGLRPAHINAFDPVTQTCLKLYTAYQEA
CDRAGLVDFAEILLRALELLRGNQHIREHYQARFKHILVDEFQDTNAIQYAWLRMMAGAQ
SNVMIVGDDDQSIYGWRGARVENIEKFTREFPSVNTIRLEQNYRSTKTILEASNTLIANN
SERMGKQLWTEGLVGEPISVYSAYNELDEARFVVSKIKGWQEQGGTLTDCAILYRNNAQS
RVLEEALLQASLAYRIYGGMRFFERQEIKDALSYLRLINNRNDDTAFERVINTPPRGLGD
KTLETIRFAARDRGCTLWDASVGLLNDQVLTGRAASALSRFVELINALEEEGIDMPLHVL
TDHAVKTSGLLEMYQQEKGEKSKARIENLEELVTATRQFEKPEEAQDMTMLTAFLTHAAL
EAGEGQADEHDDAVQLMTLHSAKGLEFPLVFMVGVEEGMFPSQMSAEEAGRLEEERRLCY
VGMTRAMQKLYITYAEMRRLYGQDKYHKPSRFIRELPEGCLDEVRMKAQVSRPTSTGRFS
QTVVKESFNETGFNLGSRVRHPKFGEGTIINFEGSGPQSRVQVAFNGEGIKWLVTAYARL
EKV
NT seq
2172 nt
NT seq
+upstream
nt +downstream
nt
atgatcgatccctctctattgctcgacggtctcaacgataaacaacgcgaagcggtggca
gcgccactggaaaacttactgattttggccggtgccggcagtggtaaaacccgcgtgctg
gtgcaccggattgcgtggctgatgtcggtggaagaagcctcaccgttttcggtgatggcg
gtgacctttaccaacaaagccgcagccgaaatgcgtggccgaattgaagagctgatgcat
ggcaccgcctctggcatgtggtgtggtacttttcacggtatttgccaccgcattctgcgc
gcccattatctcgacgctaagctgctggaagattttcagatcatcgacagtgacgatcag
cagcgcctgctcaaacgccttatcaaagcgcacaatctggatgataaacagtggccggca
cgccaagttgcgtggtggatcaacaatcaaaaagatgaagggttgcgcccggcgcacatc
aacgcctttgatccggttactcaaacttgtctcaagctgtacaccgcttaccaagaagcg
tgcgatcgcgcgggcttggtcgattttgccgaaattctgctgcgcgccctagagcttctg
cgtggtaatcagcacattcgcgagcattatcaggcgcgctttaagcacattttggttgat
gaattccaagacaccaacgcgattcagtacgcgtggctgcgcatgatggcgggcgcacag
tcgaatgtgatgattgtcggtgacgatgaccaatcgatttacggctggcgtggcgcgcga
gtggaaaacatcgaaaaatttacccgcgaatttccgagcgtgaataccattcgactggag
caaaactaccgctccactaagaccattttggaagcctcaaacacactgatcgccaataac
agcgagcggatgggcaagcagttgtggactgagggcttggttggcgaacctatttcggtg
tattcggcgtataacgagctcgatgaagcgcgctttgtggtcagcaaaatcaaaggttgg
caggagcaaggcggcacactgaccgattgcgcgatcttgtatcgcaacaacgcccagtcg
cgggtattggaagaggcattattgcaggcgagcttggcctaccgcatttatggcgggatg
cgctttttcgaacgccaagagatcaaagatgcactgagttatctgcgtttgattaataac
cgtaatgacgacaccgcatttgagcgagtgattaatacgccgccgcgcggtttgggtgat
aaaaccctagagaccattcgctttgccgcgcgcgatcgtggctgcaccttgtgggatgcc
agtgtcggtctgctcaatgaccaagtcttaactgggcgtgcagctagcgcgctgagccgc
tttgttgaactgatcaatgccttggaagaggaaggcatcgacatgccgctgcacgtgctg
actgaccatgcggtgaaaacctccggtttgctggagatgtatcagcaagaaaaaggcgaa
aaatccaaagcgcggattgaaaacttggaagagctggtgacggcaacgcgccagtttgaa
aagccagaagaagcgcaagatatgaccatgctgaccgcgtttttgacccatgcggcactg
gaagccggtgaaggccaagccgatgagcatgatgatgcggtacagctgatgaccttgcac
agtgccaaaggattagagtttccgctggtgtttatggtcggcgtggaagagggcatgttc
ccgagccaaatgtctgccgaagaggcggggcgtctcgaagaggagcgtcgcctgtgttac
gtcggtatgacccgcgcgatgcaaaagctctacatcacctacgcggaaatgcgccgcttg
tacgggcaagacaagtatcacaaaccctcacgctttattcgtgaactgccagaaggctgt
ttggatgaagtgcgcatgaaggcgcaagtcagccgcccaaccagcacagggcgctttagc
caaaccgtagtaaaagaaagcttcaacgaaaccggttttaatttgggttcacgagtccgt
cacccgaaatttggtgaaggcaccatcattaactttgaaggcagtggcccgcaaagccga
gtgcaagtggcgtttaatggcgaaggcattaagtggttagtgacggcttacgcgagatta
gagaaggtgtag
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