KEGG   Vibrio paracholerae: SA104470976_02748
Entry
SA104470976_02748 CDS       T08432                                 
Symbol
csgD_2
Name
(GenBank) LuxR family transcriptional regulator
  KO
K20918  LuxR family transcriptional regulator, positive regulator of biofilm formation
Organism
vpl  Vibrio paracholerae
Pathway
vpl05111  Biofilm formation - Vibrio cholerae
Brite
KEGG Orthology (KO) [BR:vpl00001]
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   05111 Biofilm formation - Vibrio cholerae
    SA104470976_02748 (csgD_2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:vpl03000]
    SA104470976_02748 (csgD_2)
Transcription factors [BR:vpl03000]
 Prokaryotic type
  Helix-turn-helix
   LuxR family
    SA104470976_02748 (csgD_2)
SSDB
Motif
Pfam: VpsT-like_REC GerE Sigma70_r4_2 Sigma70_r4 HTH_23 TubC_N HTH_24 GNVR HTH_40 HTH_10
Other DBs
NCBI-ProteinID: SYZ82770
LinkDB
Position
2:complement(29288..29962)
AA seq 224 aa
MKDENKLNVRMLSDVCMQSRLLKEALESKLPLALEITPFSELWLEENKPESRSIQMLVID
YSRISDDVLTDYSSFKHISCPDAKEVIINCPQDIEHKLLFKWNNLAGVFYIDDDMDTLIK
GMSKILQDEMWLTRKLAQEYILHYRAGNSVVTSQMYAKLTKREQQIIKLLGSGASNIEIA
DKLFVSENTVKTHLHNVFKKINAKNRLQALIWAKNNIGIEEVNS
NT seq 675 nt   +upstreamnt  +downstreamnt
atgaaagatgaaaataaactaaacgttagaatgctttctgatgtttgcatgcaatccaga
ttgttgaaagaggcgttagaatcaaaacttcctttggcgctggaaattacaccattttct
gagctctggcttgaagagaataaaccagaaagccgcagtattcagatgctggtgattgat
tattctagaatttctgatgatgtcttgaccgattacagctcgtttaagcacattagttgt
cctgatgcgaaagaggttatcattaactgtccgcaggatattgagcataagctgctcttt
aaatggaataatttggctggagtattttatattgatgatgatatggatacccttatcaaa
ggcatgagtaaaattttgcaagatgaaatgtggttaacgcgtaaactggcccaagaatac
attctccattatcgtgccggtaactcagtcgtgacctcacaaatgtacgcaaaattaacc
aaaagagaacaacagattatcaagttacttggtagtggtgcttctaatattgaaattgca
gataaactctttgtgagtgaaaatacagtaaaaacacatctacataatgtctttaagaaa
attaatgccaaaaatcgcttgcaggcactgatttgggcgaaaaataacattggaattgaa
gaagtcaattcttaa

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