Vibrio paracholerae: SA104470976_03065
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Entry
SA104470976_03065 CDS
T08432
Symbol
rhlE_4
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
vpl
Vibrio paracholerae
Pathway
vpl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vpl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SA104470976_03065 (rhlE_4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vpl03019
]
SA104470976_03065 (rhlE_4)
Enzymes [BR:
vpl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SA104470976_03065 (rhlE_4)
Messenger RNA biogenesis [BR:
vpl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SA104470976_03065 (rhlE_4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
Utp25_C
CMS1
HI1480
UvrD-helicase
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
SYZ83081
LinkDB
All DBs
Position
2:complement(413416..414795)
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AA seq
459 aa
AA seq
DB search
MGFTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPIL
ELLAKGPKVRANQVRALILTPTRELAAQIQDNVRIYGRHLPLSSAVVFGGVKINPQMQRM
CKGADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIRKILKLLPEKRQ
NLLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPDMLVKLVKE
GNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGDIRILVAT
DIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFAIER
LTQALLPRINLAGFEPTNQLPESKLDTRPLKPKKPKKPKKVEGAGENKGSAAEHKPKAGH
RGQPTEQARTAKKGGTHSAPKKPANRPRRSSSKPETKIK
NT seq
1380 nt
NT seq
+upstream
nt +downstream
nt
atgggttttacctcgctcggtctgtctgcgccaatccttaaagctattgaagagaaagga
tacaacacgccttcgccgattcagttacaggctattcctgcggttttagcaggcaaagac
gtaatggcagcggctcagaccggtacaggaaaaacggctggctttacactacctatttta
gaattgctggcaaaggggccaaaagttcgcgccaatcaagttcgtgctttgatcctgaca
ccaacacgtgaactggccgcacaaatccaagacaatgtacgaatctatggtcgtcaccta
ccgctaagcagtgcggtggtatttggtggtgtgaaaattaacccacaaatgcagcgaatg
tgtaaaggtgcggacatcttagtggcaaccccaggccgcttaatggatctgtataaccaa
aatgcagtcaaatttgatcaattggaaattttggtacttgacgaagcagatcgcatgctc
gacatgggctttattcgtgatattcgtaagatactgaaattattgcccgaaaagcgccaa
aacctactgttttcagccaccttctcgaccgaaatccgtgagcttgccaaaggcttagtc
aataaccctgtagagatttcagtcagcccagccaactcaacggcaagaaccgttgagcag
tgcatttatcctgctgatgtgaaaaagaaaccggacatgttggtgaaattggtcaaagag
gggaattggcaacaagtgctggtatttatgcgtaccaagcatggtgccaaccgtttagct
acgtatctcaacgagcaaggtttaaccgcggccgcgattcacggcaataagagccaaggc
gcacgcacccgagcactggcggattttaaagcgggagatatacgtattctggtcgcaacc
gatattgcggcgcgtggcattgatatcccgcaactgcctcaagtggtgaattttgaattg
ccgaaaattgctgaagattacgtacaccgaattggccgaacaggccgagcgggtgaagtt
ggtaaagcgatatccttggtgagtgccattgaagcgccggaattatttgccattgagcgt
ttaacacaagccttactgcctcgtattaacttagcgggatttgagccgaccaaccaactc
cccgagtcaaaattagacactcgacctctgaaaccgaaaaagcccaaaaagcctaaaaaa
gtagagggcgctggagaaaacaaaggcagcgcagctgaacataagcctaaagctggccac
cgaggtcaacctacagagcaagctcgcacagcgaaaaaaggcggcactcattcagcgccg
aaaaaacccgcaaaccgccctcgtcgcagttcttcaaaaccagagacaaaaatcaaataa
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