Vibrio paracholerae: SA104470976_03294
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Entry
SA104470976_03294 CDS
T08432
Symbol
sbcC
Name
(GenBank) exonuclease SbcC
KO
K03546
DNA repair protein SbcC/Rad50
Organism
vpl
Vibrio paracholerae
Brite
KEGG Orthology (KO) [BR:
vpl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vpl03400
]
SA104470976_03294 (sbcC)
DNA repair and recombination proteins [BR:
vpl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
SA104470976_03294 (sbcC)
Archaeal homologous recombinant proteins
SA104470976_03294 (sbcC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SbcC_Walker_B
SMC_N
AAA_29
AAA_21
Motif
Other DBs
NCBI-ProteinID:
SYZ83309
LinkDB
All DBs
Position
2:632276..635317
Genome browser
AA seq
1013 aa
AA seq
DB search
MRPLKLILQAFGPFAGREEIDFTELGDAPLFLINGATGAGKSSILDAICYALYGETTGSE
RTGDQMRCDYADPECLTEVSFEFELAGARYQITRQPDQEIPKKRGEGMTKKSHSATLVAL
KADGNELIANKPNPVAKAVVELMGLDVKQFRQVMVLPQGKFRELLTANSKEREQIFGQLF
QTQLYSQIERALFERAAGIRKEKEEFDQQIKGTLSVVGLESEEQLQTELTELAPVLTHAQ
SQLKAEQQQWDETKAHYQAALELEQQFIRKQQLVVEIATHQEQATHIETLRQQRQQAQKA
ARLTAVHQQWHQAQKNLQQAKLKVEQQQTLLQQAKAQQQHAQQASQQASLACEEVPKLNE
QRITWQRAEQKLLAQENVQQAVAKAERELQLATQNALNLQQASEKLEQELQNQRLEWEQQ
QRQLTRLEVQKARMNQLVQQVQAREREQSLLNELQTAQQALLRFEQQHRHIQTQAEQAKL
TADKLEFAWHTQRAAELALALTQNEPCPVCGSLEHPNKAQYSGDVVTKVQVEQARQQQQD
WVQRQQEAFHAWQQQGFKTEQIAQNLTTLLSELTLQQVALLNELIEQQQILHSDIAALQQ
LNPDLLKRQIEEGEQRLAHTKMTLEKQNQNQQQAWQTLAQLQAELASLRQEIPPELSDLD
TLRSAIGRVQNQIEILQKAEHTAREQWVQAQKQFASVQAAHQAAIEAHRESQRQQEETTS
AWQQGLLHSGFSDESAYLAARLTDEAIVNIERQIAQYEERSAMLSGEQQALSRKLAEKNR
PELEPLLVKVTQAEEKMALALQAFTQYQSRMDGLQRVAKQLADLYQKNRALEAEYQVVGT
LSDIANGKTGAKVSLHRFVLGVLLDDVLLQASQRLMKMSRGRYLLKRKEERAKGNVGSGL
DLMVEDSYSGKWRDVATLSGGESFMAALSLALGLSDVVQSYSGGIRLDTLFIDEGFGSLD
PESLDLAIQTLIDLQQGGRTIGIISHVTELKEQIGLRLDVLATRMGSTLRLIT
NT seq
3042 nt
NT seq
+upstream
nt +downstream
nt
atgcgtccgttaaaacttatcctccaagctttcggcccttttgccggacgagaagagatt
gactttactgagctgggtgatgctccactgtttttgatcaatggggcaaccggtgcagga
aaaagctcgattcttgatgcgatttgctacgccttgtatggcgaaaccacaggcagtgag
cgtaccggcgaccaaatgcgctgcgattatgcggatcctgagtgtctcaccgaagtcagt
tttgagtttgagctggccggggcgcgttatcaaatcacccgccagcccgatcaagagatc
ccgaaaaaacggggtgaaggaatgacgaagaaatcccattccgctactttggttgcactg
aaagcggatggaaacgagctgattgccaacaagcccaatcctgtcgcgaaggcggtggtc
gaattgatgggacttgatgttaagcaatttcgccaagtcatggtgttgcctcaaggtaag
tttcgtgagcttttaaccgccaattcaaaagagcgtgagcagatttttggtcagctcttt
caaacccagctctacagccaaattgaacgggcgctgtttgagcgcgccgcgggcattcgt
aaagagaaagaagagtttgatcagcagatcaaaggcacgttaagtgtcgtcggactggaa
agtgaagagcagttacaaaccgagttgaccgaactggccccagtattaacccatgcgcaa
tcacaactcaaagcagagcaacagcagtgggatgaaacaaaagcgcactatcaagcagcg
cttgagttagaacaacaatttatccgcaagcagcaattggtggtagaaatcgccactcac
caagagcaggctacgcatatcgaaacactgcgccagcaacgccagcaagcccaaaaagca
gcgcgtttaaccgccgtccatcaacagtggcaccaagctcaaaaaaacctacagcaagct
aagcttaaggtggagcagcagcagactctgttgcaacaggcgaaagctcagcagcagcat
gctcaacaggccagtcagcaagccagtttagcctgtgaagaagtacccaaattaaacgaa
caacgcataacgtggcagcgtgctgagcaaaaattgctggcacaagaaaatgttcagcaa
gcggtggccaaggcggagcgtgaactgcaactggcgacacaaaatgcgcttaatctgcag
caagcgagcgaaaagctagagcaagagctacaaaaccaacgcctcgaatgggaacagcaa
cagcgccaattaacgcgcttagaagttcaaaaagcgcgaatgaatcagttggtgcagcaa
gttcaggctcgcgagcgagaacaatcgctactcaatgaattacaaactgctcaacaagct
ttattgcgctttgagcagcaacatcgccacatccaaactcaggctgaacaagcgaaactg
accgcggataaactggagttcgcatggcatacccagagggctgcggagcttgctctcgca
ctcacacaaaatgaaccttgtccggtgtgcggcagtttagagcatcccaataaagcgcaa
tattcgggtgacgttgtcaccaaggttcaggttgaacaagccagacagcagcaacaagat
tgggtgcagcgtcagcaagaggcattccatgcttggcaacaacaagggtttaaaaccgag
cagatagcgcaaaatctcacgactttattgagtgaactaactttgcagcaagtggcgtta
ttgaacgagctaattgaacagcaacagatactgcacagtgacattgctgcgctacaacag
cttaaccctgatttgctgaaacgacagattgaagagggggagcagcggttagcgcacacc
aaaatgacgctcgaaaaacagaatcaaaaccagcaacaagcttggcagactttggctcag
ttacaggcggaattggcgagtttgcgccaagaaatcccgccggagctgtccgatcttgat
actttacgaagcgcgattgggcgtgtgcagaaccaaatagaaatcttacaaaaagcggag
catacggctcgtgaacagtgggtgcaggcgcaaaagcagtttgccagtgtgcaggcggct
catcaggcggcgattgaagcgcaccgtgagtctcagcgtcaacaggaggaaaccacaagc
gcatggcagcaagggttactccattctggatttagcgatgagtccgcctatcttgccgct
cgtttaaccgatgaggctatcgtcaatatcgagcgccaaatcgcccagtatgaagagcgc
agtgcgatgctcagtggcgaacagcaagccttatcacgtaaattagcagagaaaaatcgc
ccagagctggaaccacttcttgtcaaagtaactcaagctgaagaaaaaatggcactggcg
ttgcaggcgtttacgcaatatcaatcgcggatggatggtttgcaacgtgtcgccaagcaa
ctagcggatctgtaccagaaaaatcgtgcattagaagccgaatatcaggtcgtgggcacc
ttaagtgatattgcgaatggcaaaacgggcgctaaagtcagcctacatcgctttgtgctt
ggcgttttgctggatgatgtcttgttacaagcttctcaacgactgatgaaaatgagccga
ggccgctatttactcaaacgtaaagaggaacgcgctaaaggtaatgtgggttcaggattg
gatttgatggtcgaagatagctacagtggcaaatggcgtgatgtagcaaccttgtccggt
ggtgaatcgttcatggccgccttatcgcttgcgcttggtttgtccgatgtagtgcagtct
tatagtggtggtatccgtcttgatactctgtttattgatgaaggctttggtagtttggat
ccggaatctttagatttagcgatccagaccctgatcgatcttcaacaaggcggccgaacg
ataggaatcatctctcatgttaccgagctgaaagagcagatcggtctaagattggatgtg
ttagcgacaagaatgggtagcacgctgcgtttaatcacataa
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