Vermiphilus pyriformis: KG892_00315
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Entry
KG892_00315 CDS
T07973
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
vpm
Vermiphilus pyriformis
Pathway
vpm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vpm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KG892_00315
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vpm03019
]
KG892_00315
03009 Ribosome biogenesis [BR:
vpm03009
]
KG892_00315
Enzymes [BR:
vpm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KG892_00315
Messenger RNA biogenesis [BR:
vpm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KG892_00315
Ribosome biogenesis [BR:
vpm03009
]
Prokaryotic type
rRNA helicases
KG892_00315
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
DbpA
ERCC3_RAD25_C
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
UNE35463
LinkDB
All DBs
Position
60719..62386
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AA seq
555 aa
AA seq
DB search
MTFSNLGVDAALCDVLERMEILNPTPVQEKAIPILIEKKDVDIHAQAQTGTGKTLAFGIP
LVQRINPSLNYVQALVVAPTRELVLQITEQLTPLARARGVNIQPIYGGVSMHEQIRVLAR
GVHIVVGTPGRLNDHLRRKTMNLNNLQVLVLDEADIMLDMGFKEEIDQILTYTPKDRRIW
LFSATVKQGIHDIMQNHMRDTVSVRTSKQQVGTTHIVQYYAVVPLKDRFEALCRFIDTSV
AFYGFIFCQTKILTAEVAEHLIRAGYRATALHGDMSQQERNRVIKQFKARKFTILVATDV
AARGIDINDLTHVVNYSLPEDSEAYVHRVGRTGRAGKEGTAITFIAARQVRSIKQLEKKF
SVTIKPIDVPSKDEITKVRIAQASEHLASLCHQQVPETKYTSQLKAIVTEYDHGELVNAV
VALLSQTMNIKDESETYFAPTSSVESSSDHQDQSAEQEIVLFAGTDDGVTQDKIVHVVSK
TQGWSPSDLYKVKVLKKRTFIRTEPERAQELIKILIGANMTPKRLRGTIIFDTGEEHQQR
KSSSRSGGPRGRSRR
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
atgacatttagtaaccttggtgttgatgctgcgttatgtgacgttcttgagcgtatggag
atattaaatcctactccagttcaagaaaaggcaatccccatccttatagaaaaaaaagac
gtagatattcacgcacaagctcaaaccggaacaggaaagactcttgcttttggtattccg
cttgttcagcgtattaatccgtcattaaattacgtacaagctttggttgttgcacctacc
cgtgaattagtactccaaattaccgaacaattaactccgttagcgcgtgcgcgtggagtt
aacattcaacctatctatggtggcgtgtctatgcatgagcaaattagagtccttgctcgt
ggcgtacatattgtagtcggaactcctggtcgattgaatgatcacttgcgacgtaagact
atgaatttgaacaatttacaagtcttagttcttgatgaagctgacattatgcttgatatg
ggctttaaagaagaaattgatcaaattttaacatatactccaaaagatcgccgtatttgg
ttgttctctgcaacggtcaaacagggtattcatgacattatgcaaaaccatatgcgtgat
acggtcagtgtacgtacaagcaaacaacaagtaggtactacacacattgttcagtattat
gcggtagttccattaaaagatcgttttgaagcgttatgccgatttattgatacgtcggta
gcgttttatggatttatcttttgccaaacaaaaattttaacagcagaagtagctgaacat
ttaatccgtgccggatatcgcgcaaccgcgcttcatggtgatatgagtcagcaagagcgt
aatagagttatcaagcaatttaaagcacgtaaatttactatattggtagcaactgatgtg
gcagcacgtggtattgatattaatgatttgactcatgtggttaattactcgttgcctgaa
gattcagaagcgtatgtacatagagtaggtcgaacagggcgtgcaggaaaagaaggtact
gcaatcaccttcattgcagctcgtcaagttcgctctataaaacagcttgaaaagaaattc
tcagtaactatcaagcctatagatgttccaagtaaagatgagattacaaaagttcgtata
gctcaggcaagtgaacatttagcttctttatgccatcaacaagttcctgagactaagtat
actagtcaattgaaagctattgtgactgagtatgatcatggtgaattagtaaatgcagta
gttgcgttgctaagtcagactatgaatattaaagatgaatcagaaacatactttgcacca
acaagctcagttgaatcttcttctgatcatcaagatcagtctgcagaacaagaaatagta
ttatttgcaggtactgacgatggtgtgactcaagataagatagtccacgtggtttcaaaa
acacaaggatggtcaccttcagatctttacaaagtaaaagttcttaaaaagcgtacattt
attaggactgaaccggagcgtgcgcaagaacttatcaaaattttgataggagctaatatg
acgccaaagcgtctgcgcggtactattatttttgatactggtgaagagcatcaacagcgt
aagtcatcatctcgatcaggtggcccacgaggacgttctcgtcgttag
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