Vermiphilus pyriformis: KG892_00355
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Entry
KG892_00355 CDS
T07973
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
vpm
Vermiphilus pyriformis
Pathway
vpm03030
DNA replication
vpm03430
Mismatch repair
vpm03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vpm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KG892_00355 (dnaE)
03430 Mismatch repair
KG892_00355 (dnaE)
03440 Homologous recombination
KG892_00355 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vpm03032
]
KG892_00355 (dnaE)
03400 DNA repair and recombination proteins [BR:
vpm03400
]
KG892_00355 (dnaE)
Enzymes [BR:
vpm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
KG892_00355 (dnaE)
DNA replication proteins [BR:
vpm03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
KG892_00355 (dnaE)
DNA repair and recombination proteins [BR:
vpm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
KG892_00355 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
UNE35470
LinkDB
All DBs
Position
complement(68203..71664)
Genome browser
AA seq
1153 aa
AA seq
DB search
MSQHFTHLHLHTDYSLLDGAISLDRLVEFAKVQQFKSLAMTDHGNIFGAVKFFEKCKKSG
IKPILGMEAYLTEDAKIKSPDKKYYHLILLVENERGYQNLCKLISYSFQEGFYFKPRIDY
AILEKYSEGLIATSACLGGHIPRLLMENKQEEAHKRLDWFLDVFGPERFYLEVQPEDQRD
QTILNNKLLTIASERNIRPIATGDCHYINEQDREAHEVMLAIQTQDKMDNPNRYTFGDCK
VYVRSTEQMLECFKNNPEAVWNTGIIADRCNFEFQTGKLFFPKFEIPETYTQETYFKHLC
LIGFEKLKAEKRFELEREAEYRARLELEADLIITMGFVGYFLVVSDFIQWSKRNGIPVGP
GRGSAAGSLVAWALEITNIDPIKYNLLFERFLNPERVSMPDIDIDFCINGRERVINYVRD
RYGHDKVCQIITFGTMMAKGAIKDVARALSFPFEDSNAITDLIPDQLKITLKEALEQEPR
LQQLIDNNPKAHKLFDIAFKLEGLTRHASKHAAGIVISPEPIDQVLPVYVPAKSTELVTQ
YAMTELETLGFLKMDLLGLKNLTLIDNVLKLIYKIRGISLNIDTIPLDDKAAFALMCAGK
TSGVFQLESDGLKEVLRKLQPDKFEDIIAVNALYRPGPLGSGMVDDYIERRHGRQKIQYL
FPELEPILDETYGVIVYQEQVIKIASTIGGYSLGEADILRRAMGKKKADVMAQQRAIFLE
RAQSKGFDATKAGELFDLMAYFAGYGFNKSHSAAYALIAYQTAYLKANYTSEFMACLISL
DTDDTDKMAFYIAEAKDLSIQVIPPDINRSEIEFSVDNNAIVFGLRGIKNLGMAALENIM
SARSKGPFIDMLDLCIRIDLRTANKRVLENLASSGALDCLPGTRAQKYSEVAKIIELAAQ
KQKSALTGQMDLFGLTKELADPTATNTHEQYIFGARSDWTDKEKLEKELEVVGCYLSNHP
LETYQSTLKAIRPITFAQGIAQTLQNSDGKEPWVVSCGLIKSKKEILTKKGERMAFLQLE
DQSGTAEVIIFPKLFSTVEHWLSTHHVFVVKGTVDLASTVNCKIKATAFVPIELVWDKWP
ASSHVSLELPTRFDIDFLQSLKTQLPQGTIPLHFRLTERETPLRITTIHTLQPTAEWCSQ
LETLGVRVQYCLE
NT seq
3462 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcaacattttacacatcttcatcttcatactgattattcgttgcttgatggagcg
atttctttggatcgcttggtcgagtttgccaaggtacaacaatttaaatcgttagccatg
actgatcatggcaacatatttggtgcagtgaagttttttgaaaaatgcaaaaaaagtgga
attaagccaatattgggcatggaagcttatttgactgaagatgctaagattaaatcacct
gataaaaaatattatcacttaattcttttggtagaaaatgaacgaggataccaaaactta
tgcaagttaatatcctattcatttcaagaaggtttttattttaaaccacgtatagactat
gcaatccttgaaaaatactcagaaggtctgattgcaacatcagcgtgtttgggtggacat
atacctcgactattgatggaaaataaacaagaagaagcgcataaacgactggattggttt
cttgatgtatttggacctgaacgattttatcttgaagttcagcctgaagatcaacgtgac
caaaccatattaaataataaattacttactatcgcatctgagcgtaacatacgtcctatt
gcaaccggtgattgtcactatattaacgagcaggatcgagaagcccatgaggtcatgctt
gccattcaaacacaagataaaatggacaatcccaaccgctatacttttggtgattgcaaa
gtatacgttcgctcaactgagcaaatgcttgaatgttttaaaaacaatcctgaagctgtt
tggaacacgggaattattgcagatcgctgtaattttgaatttcaaacgggtaagctcttc
tttcctaaatttgaaataccggaaacctatacccaagaaacctactttaaacatttatgt
ttaattggctttgaaaaacttaaagctgaaaagcgctttgaattagaacgcgaagctgaa
tatcgcgcgcgactggagttagaagccgatttgattattacaatgggttttgttggttat
tttttagtagtcagtgactttattcaatggtcaaaacgtaatggaatacccgtagggccg
ggtcgaggttctgcagcaggatcacttgtagcatgggctttggaaattactaatattgac
cctattaaatataatttacttttcgagcgctttttgaatcctgaacgagtatccatgcct
gatatagatattgatttttgtatcaatggacgcgagcgagttattaattacgtacgggat
cgatatggtcacgacaaagtgtgccaaataattacctttggtactatgatggcaaaaggt
gctatcaaggacgtagcacgtgctttaagctttccttttgaagattcaaatgctattacg
gatcttattcctgatcaacttaaaattacgctcaaagaggcgcttgaacaagaaccacgg
cttcagcaactgattgataataatcccaaagcacataaattatttgatatcgccttcaag
cttgagggccttactcgccatgcatccaaacatgcagcgggaatcgttatttcacccgaa
ccaatcgatcaggttttacccgtatatgtccctgccaaaagcaccgaattggtaactcag
tacgcaatgacggagcttgaaacacttggttttttaaaaatggacttgctggggctgaaa
aacttaacattaattgataacgtacttaaattgatttataaaatacgtggcattagtctc
aacatcgatactatacctcttgatgacaaagcagcatttgcacttatgtgcgctggtaaa
acttcaggtgtattccaattagaatctgatggattaaaagaggtattgcgtaagttacag
cccgataagtttgaagatattattgcagtcaacgccttgtatcgaccagggccacttgga
tcaggaatggtcgacgattatattgaacgtcgccatggcagacaaaaaatacagtactta
tttcctgaacttgaacctatccttgatgaaacctatggcgtcattgtatatcaagaacaa
gtaattaaaattgcatctactataggcggatatagtttaggagaggctgacattctacgt
cgtgcgatgggtaagaaaaaagcagatgtgatggctcagcaacgagcaatctttttagaa
cgtgctcaatctaaaggatttgatgctacaaaagccggtgaactgttcgatcttatggct
tattttgcaggatatggatttaataaatcacattcagcggcctatgccttaattgcatac
caaactgcctatttgaaagcaaattatacttcagaattcatggcatgcctgatatctctt
gatactgatgatacggacaaaatggcattttatattgctgaggccaaagacttatctatt
caagttatccctcctgatattaatcgatctgaaatcgaattttcagtcgacaataacgct
attgtttttggacttcgggggattaaaaaccttggtatggctgcacttgaaaatatcatg
tccgctcgcagcaaaggaccttttatcgatatgcttgatttgtgcatacgaatcgactta
agaactgcaaacaaacgtgttcttgaaaatctagcaagctcaggtgcactcgattgcctt
ccaggaacacgcgctcaaaaatatagcgaagttgcaaaaattatagaactggcagctcaa
aagcaaaaaagcgcacttacaggccaaatggatttatttggattgactaaggaacttgct
gaccctaccgctacaaatacccatgaacaatatatttttggagcacgatctgactggact
gataaagaaaaattggaaaaagaattagaagtcgtaggatgttacttatcaaatcatccc
ttagaaacttatcaatcaacattaaaagcaatacgtccgatcacttttgcccaaggtatt
gcacaaacattgcaaaattctgatggcaaggagccctgggttgtctcatgcggacttatc
aaatcaaagaaagagattctcaccaaaaaaggtgagcgcatggcatttttacaattagaa
gatcaaagcggaacagctgaagttattatatttccaaaattattcagcactgtagagcat
tggctttcaacgcatcacgtttttgtagttaaaggtacggttgatctggcaagcacggtt
aattgtaaaatcaaagcaactgcttttgtacctatagaattagtctgggacaaatggcca
gcatcatcgcatgtaagccttgagctcccaacacgctttgatatcgattttttgcaatca
cttaaaacacaattgcctcagggaaccatacctttacattttagactgactgaacgcgag
actcctttacgcattaccactatacatacactacaacctaccgctgaatggtgttcgcag
cttgagactcttggcgtcagagtacaatactgtcttgaataa
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