Vermiphilus pyriformis: KG892_01835
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Entry
KG892_01835 CDS
T07973
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
vpm
Vermiphilus pyriformis
Brite
KEGG Orthology (KO) [BR:
vpm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vpm03032
]
KG892_01835 (topA)
03400 DNA repair and recombination proteins [BR:
vpm03400
]
KG892_01835 (topA)
Enzymes [BR:
vpm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
KG892_01835 (topA)
DNA replication proteins [BR:
vpm03032
]
Prokaryotic type
DNA Topoisomerases
KG892_01835 (topA)
DNA repair and recombination proteins [BR:
vpm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
KG892_01835 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
Toprim_4
CK_II_beta
Zn_ribbon_InsA
Motif
Other DBs
NCBI-ProteinID:
UNE35741
LinkDB
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Position
366816..369023
Genome browser
AA seq
735 aa
AA seq
DB search
MKKLLIVESPAKIKTISKFLDKEFKIMSTMGHIMDLPTKHVGVTMNDSIEIEYVPLDKKE
KTIAELCKAAQKAEEIYLAPDPDREGEIIAWHTAGEILKVVNPKKVKIYRIAFNEITKPA
ILDAVNNPGNIDLQKVAAQQARRVLDRWVGYEVSPVLWKKFAPGLSAGRVQSVALRLICE
REDEIRNFKPEEYWSIHGLFTYQTDQLEAALVTIGKEKIDIKTKENASSIVNGIKQQSYK
VESVTDKKRSKSPLAPFMTSTLQQAAFNQLGFTVKKTMTVAQQLYEGIPLSDPTTPIALI
TYMRTDSLRISNTALEQARDYISTSFNSEYLPTKPQLYAKSKAATQDAHEAIRPVDLKIT
PERAYAHLSKDAARLYELIWKRFVACQMSPAQYAQRQVTISGGPYTFKATGSTLLFDGFL
AVYHDAQDEEKDQKVIIPASFTAKKQVNLQKVTPKQHFTQAPPKYTEGSLVKELEKEGIG
RPSTYATILSTIQARSYTTLDSKKRFTPTDLGMAVTRLLSESLPGIMAVKFTAHMEEDLD
KVASGTLARDKLLKEFYKAFEKELSALKGADSKKVSEPTTIECPACHKSNLVIRFGKTGE
FLGCPTYPACTFTAKFTRAEDGTIIISAPEEPKLLEETCPLCGKPLRVVSGRFGQFIACS
GYPDCTYIKQTKAEVQCPLDGGDLVKRKWRGGSFWGCSNYPKCNFAVFGEIEQQPCPVCH
RPFWLKKLKKMVILP
NT seq
2208 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaactcttaattgtagagtctcctgcaaaaataaagacaatatctaaattctta
gacaaagaatttaagattatgtccacgatgggccatattatggacctgccgaccaagcac
gtgggagtcactatgaacgactctattgaaattgaatatgttcctttggacaaaaaagaa
aaaactatcgctgagttgtgtaaagcagcacaaaaggcagaggaaatatacttagcccct
gaccctgaccgcgaaggtgaaattattgcctggcataccgcaggtgaaattttaaaagtt
gttaatcccaaaaaggttaaaatttatcgtattgcatttaacgaaattaccaagccagct
attttagatgccgtcaataatcccggcaatatagatttgcagaaagtagccgcacaacag
gcacggcgggttcttgatcggtgggtgggttatgaagtatcacctgttctttggaaaaaa
tttgcacctggtctttcagcaggacgtgttcagtcagtggcgctgcgccttatctgcgag
cgcgaagatgaaattagaaactttaaacctgaagaatattggtcaatacacggattattt
acctatcaaacagatcaacttgaagctgcgttagtaacaattggaaaagaaaagatagat
atcaaaacaaaagagaacgcttcttctatagtaaacggtattaaacagcaaagttataaa
gttgaatcggttactgataaaaagagaagtaagtcgccacttgctcccttcatgacaagc
accttacaacaagcagcgttcaatcaacttggttttacagttaaaaaaactatgactgta
gcgcagcaactgtatgaaggtatacctctgagtgatcctactacacccattgcgttaatt
acttatatgcgtaccgattctctacgcatatcaaacactgcccttgaacaagcacgtgat
tatatttccacgagctttaacagtgaatatttacctacaaaacctcagttatatgccaaa
agtaaagcggctacccaggatgcccatgaagcaatacgcccagtagacttaaaaattact
cctgaacgtgcgtatgctcatttatcaaaagacgccgccaggctgtatgaactaatatgg
aaacggtttgtagcatgccaaatgagccctgcacaatatgcacaacgacaggttaccatt
tcagggggaccttatactttcaaagcaacaggctctacacttttgttcgatggatttttg
gcagtataccatgatgcacaagatgaagaaaaagatcaaaaggttataattcctgcctct
tttaccgctaaaaaacaagttaatctccaaaaagtgacgccaaaacagcattttactcaa
gcgccaccaaagtacactgaaggatcattggtcaaagaactggaaaaagaaggtataggg
cgacctagcacctatgctactattttaagtactattcaagctcgatcttacacaacactt
gatagtaaaaaacgttttactcctactgatctgggaatggcagtaacaaggctattaagc
gaaagtcttcctggtattatggcagtaaaatttacagctcatatggaagaagatcttgat
aaggtggctagtggtaccctggcacgagataaattacttaaagaattttacaaagccttt
gaaaaagaactctcagcactaaaaggcgcagattcaaaaaaagtttctgaaccaactact
attgaatgccctgcgtgtcacaaaagtaatttagtcattcgctttggaaaaacaggagaa
tttctcgggtgtcctacttatccagcgtgtacattcaccgcaaaattcactcgagcagaa
gacggaaccatcataattagtgctcctgaagaacccaaattacttgaagaaacatgtccg
ttatgcggcaaaccactccgagtagtgtcaggtagatttggtcagtttattgcctgttca
ggatatcctgattgtacttacattaagcaaacaaaggcagaagtacaatgtcctttagat
ggcggtgatttagttaaaagaaaatggcgaggaggttctttctggggttgctccaactat
ccaaaatgtaactttgctgtatttggtgaaatagagcaacagccttgtcctgtatgtcat
cgtccattttggctaaaaaaactgaaaaaaatggtgatattaccctaa
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