Virgibacillus dokdonensis: A21D_00804
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Entry
A21D_00804 CDS
T05261
Symbol
helD
Name
(GenBank) Helicase IV
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
vpn
Virgibacillus dokdonensis
Pathway
vpn03420
Nucleotide excision repair
vpn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
vpn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
A21D_00804 (helD)
03430 Mismatch repair
A21D_00804 (helD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vpn03400
]
A21D_00804 (helD)
Enzymes [BR:
vpn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
A21D_00804 (helD)
DNA repair and recombination proteins [BR:
vpn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
A21D_00804 (helD)
MMR (mismatch excision repair)
Other MMR factors
A21D_00804 (helD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD_C
UvrD-helicase
AAA_19
UvrD_C_2
Viral_helicase1
AAA_30
DEAD
SLFN-g3_helicase
ResIII
Motif
Other DBs
NCBI-ProteinID:
AUJ23916
UniProt:
A0A2K9IVY2
LinkDB
All DBs
Position
complement(859053..861461)
Genome browser
AA seq
802 aa
AA seq
DB search
MLNRLKYYVSFLYNYPNLHYIMFEKEGQGKWKGVAEMPEMHKDLPQEQQRVDHIREEINQ
KENKLFKKTAQLKENVIELRKTFWDDVTVNLDEPDDVIETEASIKQQAELLAQKETVHGS
LAKELKTLNKLKDNPYFGRIDFKEDGEEKEKIYIGIASLMDKEEEDFLIYDWRAPISSLY
YDYALGEASYQTLAGEISGEISLKRQFIIRQGKMKAMFDTGLTIGDQLLQEALGNNASTT
MRNIVATIQKEQNKIIRNEKSKLLLVQGVAGSGKTSAALQRIAYLMYRYRKQLNPENVML
FSPNPLFTSYINNVLPELGEENVRQTTFYHFVQKKVGDDFSVESPFDQMEYMLTNKHTMT
DQIRMQGIEYKSSLAFKQMVDAYLATLHDKGICFRPVLFRGEVLISKEAIADYFYTMESS
ISLPNRMELVADWLLKELTSIQQEEVSKDWVGEKIELLDKEAYAKAYYKARQQGADSVMD
EEAILRKAVVHKMFASMKAKVKDFAFVDVAKTFEQLFKYHPELAELPNSWKDMAAQTVEH
IQSSHLQWEDVTPYVYFKGQLLGDMKDRSVRYLVIDEAQDFSAFQFAYVSELFPHTRMTL
LGDINQTIYAPISKQNPLLLKDGEEVERITLMKSYRPTKQLVQFTKHFVPGEHEIEPFER
EGNKPKLIYVNKETQRKEVLKHQIKNLMNEGYETIALVTKSLQESKHIYDALTGEVPCTL
LDEETYTLSKGVLIIPVYLAKGIEFDAVIIPDATNSNYTKEDQTLFYIACTRAMHELVMV
ANEEPNVFIQEASVGTYKADKK
NT seq
2409 nt
NT seq
+upstream
nt +downstream
nt
atgctaaataggttaaagtattatgtttcatttttatacaattatcctaatttacattat
atcatgtttgaaaaagagggtcaaggaaaatggaaaggggttgcggaaatgccagaaatg
cataaagatttgccgcaagagcaacaacgtgtagatcatattcgagaagaaattaatcag
aaagaaaacaaattattcaagaaaactgcacaattaaaagaaaatgtcatcgagttaaga
aagacattttgggacgatgtaactgtcaatttggatgagccagatgatgtcattgaaaca
gaggcaagcataaaacaacaagcagaactgctagcacaaaaagaaaccgttcatggcagt
ttggctaaagaattaaaaacattaaataagttaaaagataatccgtattttggacgcatt
gattttaaagaagatggagaagaaaaagaaaaaatttacattggcattgcttctctaatg
gataaagaagaggaggacttcctcatttatgattggcgagcgcctatatcaagcctttat
tacgactatgcattaggtgaagcaagttatcaaaccttagctggggaaatctctggagaa
atctctttgaagcggcaatttattattcgccaaggaaagatgaaggcgatgtttgacacg
gggcttaccattggcgaccaattgttacaagaggcgttaggtaataatgcaagtacaacg
atgcgtaatattgtcgccaccattcaaaaagagcaaaataagattattcgtaatgaaaag
agtaaattattgttggtgcaaggtgttgctggtagtgggaaaacttccgcagcattacaa
cgaatagcttatttgatgtatcgttaccgtaaacagttaaacccagaaaatgtgatgctg
ttttcccctaaccctttgtttacaagttatattaataatgtattacctgagcttggggaa
gagaacgtgagacaaactaccttttatcactttgtgcaaaaaaaggtaggagatgatttc
tccgttgaatctccttttgatcaaatggagtacatgttaacaaataaacatacaatgacg
gatcaaatacgtatgcaggggattgaatataaatcttcgttagcatttaaacaaatggtg
gatgcatatttggcaactttacatgacaaggggatttgttttcgccctgttttatttcgc
ggagaagtactcatttccaaagaggcgatcgctgattacttttatactatggaatcatcc
atttctttaccaaaccgaatggagctagtagcggattggctgttgaaggaattaactagc
attcaacaggaggaggtttcgaaggattgggtaggagagaagatagagctgttggataaa
gaagcctatgctaaagcgtattataaagcgcgacaacaaggtgcggacagtgtgatggat
gaagaggctattttaagaaaggccgtcgttcataaaatgtttgctagtatgaaagcgaaa
gtgaaggactttgcgtttgtagatgtcgcaaaaacatttgaacagttatttaaataccat
ccagagctagctgagctccctaattcatggaaggatatggctgcgcaaacagtggaacat
attcaatctagccatctgcaatgggaagatgtaacgccatatgtgtattttaaagggcag
ttattaggagatatgaaggatcgatccgtacgttatttagtcatagatgaggcgcaagat
ttttctgctttccaatttgcctatgtctcggaattatttccacatacgagaatgacgtta
ttaggcgatataaatcaaactatttatgccccaatatcgaaacaaaatccattgcttcta
aaagatggagaagaggtagagcgcattacattaatgaaaagctaccgtcctacaaagcag
ctcgtccaatttaccaagcattttgtcccaggtgaacatgaaattgaaccattcgaacgg
gaaggaaacaaacccaagcttatctatgtaaacaaagagacgcaacgtaaagaagtgtta
aagcatcagataaagaatctaatgaatgaaggctatgaaacgatagctctagttacgaaa
tctttacaggagagtaaacatatctatgatgcgttaacaggggaggttccctgtacctta
ttggatgaagaaacgtatacattatcaaaaggagttttgatcatccctgtatatttagca
aaggggattgaatttgatgccgttattattccagatgcaacgaatagtaactatacaaag
gaagatcaaactttgttttacattgcttgtacgcgagcaatgcacgagttagtcatggtg
gctaacgaggagccaaatgtatttatacaggaagcgtctgtaggcacatataaggcggat
aaaaaataa
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