KEGG   Virgibacillus dokdonensis: A21D_02112
Entry
A21D_02112        CDS       T05261                                 
Name
(GenBank) positive control sigma-like factor
  KO
K24072  positive control factor
Organism
vpn  Virgibacillus dokdonensis
Brite
KEGG Orthology (KO) [BR:vpn00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:vpn03021]
    A21D_02112
Transcription machinery [BR:vpn03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     A21D_02112
SSDB
Motif
Pfam: Sigma70_r4_2 GerE HTH_23 Sigma70_ECF UPF0122 Sigma70_r4 HTH_28 PhyR_sigma-like Terminase_5 HTH_10 HTH_29 HTH_3 HTH_38 HTH_40 Phage_antitermQ Fe_dep_repress TrmB HTH_24 HTH_7 HTH_17 DUF5105 DNA_pol3_delta_C HTH_6 MarR_2 HTH_25 YdaS_toxin HTH_1
Other DBs
NCBI-ProteinID: AUJ25176
UniProt: A0A2K9IZT3
LinkDB
Position
2241257..2241784
AA seq 175 aa
MNMWVDRLVSEYEAGRKELAKKKGKLNTEFISDREDKKHINSMINDMSESIEWMKTGRRP
GNLRGIDKRSAYQRRALIDMDLFPSLDIQPEEKEISEEQKRLLVNILVELSHRERQCYLL
HMAQGYSMREVAEELKISKASVQKFIERAKNKINRKLSCHTNVVRTRTGDEKAVM
NT seq 528 nt   +upstreamnt  +downstreamnt
atgaatatgtgggtagatagattagttagtgaatatgaagcaggacgaaaagaattggca
aaaaagaaaggtaaactaaatactgaatttatatctgatagagaggataagaaacatatt
aatagcatgattaatgatatgtctgaatccattgaatggatgaaaacaggacgtagacca
ggtaacttacgaggtattgataaacggtcagcatatcagcgcagagctttaatagatatg
gatttattcccctctttggatattcaacctgaagaaaaagaaatttcagaggaacaaaag
cgtttattagtaaatattcttgtagaattatcacatagagaaagacagtgttatttgctt
catatggctcaaggatatagtatgcgtgaggttgcagaagaacttaaaatatctaaggca
tctgtacagaaattcattgaacgagcaaagaataaaataaatagaaaattatcttgtcat
acgaatgtcgtacgaacccgtactggggatgaaaaggctgttatgtag

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