Virgibacillus dokdonensis: A21D_02254
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Entry
A21D_02254 CDS
T05261
Symbol
rlmCD
Name
(GenBank) 23S rRNA (uracil-C(5))-methyltransferase RlmCD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
vpn
Virgibacillus dokdonensis
Brite
KEGG Orthology (KO) [BR:
vpn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
vpn03009
]
A21D_02254 (rlmCD)
Enzymes [BR:
vpn01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
A21D_02254 (rlmCD)
Ribosome biogenesis [BR:
vpn03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
A21D_02254 (rlmCD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRAM
Methyltransf_31
Methyltransf_25
TRM5-TYW2_MTfase
Methyltransf_15
Methyltransf_11
MTS
PrmA
RrnaAD
PCMT
Methyltransf_4
Methyltransf_23
N6_N4_Mtase
Ubie_methyltran
FtsJ
TRM
UPF0020
Methyltransf_12
Methyltransf_32
Motif
Other DBs
NCBI-ProteinID:
AUJ25318
UniProt:
A0A2K9J033
LinkDB
All DBs
Position
2410229..2411611
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AA seq
460 aa
AA seq
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MAKKAVPVKKNETLTLTFEDLTHEGNGVAKVNGYPLFVPYGLPGEKALVKVVKANKNFGF
GKLLEVKKASTERVEAPCNVYYKCGGCQLQHMSYHLQLEMKRNQVKNVMRKIAHMDHVPV
HPTLGMTDPWRYRNKVQIPVGEKEGAIITGFYQKRSHRIIDDMDTCLIQDEVNDRMVEAV
RRISSQLGISAYDESTHRGVLRHIMVRTGRETKDTMIVLITRTEKLPHQDALIQALTEMY
PHVKSIIHNVNKEKTNVILGKKSKIIWGDAYIYDTIGDIQFAISAKLFYQVNPPQTKVLY
EKALEYANLSSSDVVIDAYCGIGTFSLFLAQQAKKVYGIEVVPEAISDAKRNAELNGITN
VEFVVGEAEKVMPWWKAQGLRPDVIIVDPPRKGCDEAFLEAMIEMEPKRIVYVSCNPSTL
ARDLNILDAGGYETKEVQPVDMFPQTNHVECVAVLQREVV
NT seq
1383 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaaaaagcagtacccgtaaaaaagaatgaaacgttgacgctcacatttgaagat
ttgacacacgaaggaaacggcgtggcgaaagtgaatggctatcctttatttgtaccgtat
ggattgccaggtgaaaaagcgctcgtgaaagtcgttaaagcgaataaaaattttggcttt
gggaaacttttagaagtaaagaaagcaagcacggagcgagtcgaagcgccttgtaacgtc
tattataaatgtggtggctgtcaattacagcatatgagctatcacttgcaattagagatg
aagcgaaaccaagtgaaaaatgtaatgcggaaaatagcgcatatggatcatgttcctgtt
catcctacattaggtatgaccgatccatggcgttatcgcaataaagtacaaattccagtg
ggggaaaaagaaggcgcgataattactggcttttatcaaaaacgcagtcatcgtattatt
gatgatatggatacttgtctcatacaggatgaagtgaatgatcgcatggtagaagcagtg
cgcagaatttcctcgcagttaggtatctctgcttatgatgaatcgacacatcgcggagta
ttacgtcatattatggtgcgtacaggaagagagacgaaggatacaatgatcgtcctaata
acgaggacggaaaaactgccgcatcaagatgcactcattcaagcattgacagaaatgtat
cctcacgtcaaatccattattcataatgtgaataaagaaaaaacgaatgtgatccttggc
aagaagtcaaaaattatttggggagacgcttatatttacgatacaatcggcgacattcaa
ttcgctatttccgccaaattattttaccaagttaatccaccacaaacaaaagtcctctac
gaaaaagcgttggaatatgccaatctgagctcatccgatgtggtgattgatgcgtattgt
ggtatcggtacgttttctttatttttagcacagcaagcgaaaaaagtgtatggaatagaa
gttgttccagaagcaattagcgatgctaagagaaatgcggaactaaacggaattacaaat
gtcgaattcgttgtaggtgaagcggaaaaggtaatgccatggtggaaagcgcaaggattg
cgcccagatgttattatcgttgatccgccacgcaaaggttgcgacgaagcgtttcttgaa
gcaatgatcgagatggaaccaaagcggattgtgtacgtttcctgtaacccatctacatta
gctcgggatttaaacatattagatgcgggcggctatgaaacgaaagaagtgcaaccagtt
gacatgtttccacagacgaatcatgtggagtgtgtggcggttttacaaagagaagttgtc
taa
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