Virgibacillus dokdonensis: A21D_02960
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Entry
A21D_02960 CDS
T05261
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
vpn
Virgibacillus dokdonensis
Pathway
vpn03030
DNA replication
vpn03430
Mismatch repair
vpn03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vpn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
A21D_02960 (dnaE)
03430 Mismatch repair
A21D_02960 (dnaE)
03440 Homologous recombination
A21D_02960 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vpn03032
]
A21D_02960 (dnaE)
03400 DNA repair and recombination proteins [BR:
vpn03400
]
A21D_02960 (dnaE)
Enzymes [BR:
vpn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
A21D_02960 (dnaE)
DNA replication proteins [BR:
vpn03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
A21D_02960 (dnaE)
DNA repair and recombination proteins [BR:
vpn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
A21D_02960 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
tRNA_anti_2
HROB
BamHI
Motif
Other DBs
NCBI-ProteinID:
AUJ26002
UniProt:
A0A2K9J226
LinkDB
All DBs
Position
3205100..3208465
Genome browser
AA seq
1121 aa
AA seq
DB search
MVFTHLQIRSSYSLLKSTITIEELVQRAAELGYTALALTDEQVLHGAIKFYKAAKNNGLK
PIIGLTILVGDSQEEAHEMVILAKSNQGFQELIKLSTWLRTEELSFIEVEQLLTYTADCV
GILSFNHGNIVKQLRNKSFVELNEYISAYRQAFGENDFYIALESYGDGSNHPSFFAEVKQ
FQEMYHDSVVAMHDVRYLNKKDVLAYDCLRAMKVQRIWDGTYVDDKWRNHHLCSEKEMQQ
YFSEWPEAVEETASIVEKCNLNINFEQQHLPSFPLPENQQPHCYLTEKCFAVLSQKYTKV
TDEIRERLHHELNIIEQMGFSDYFLIVADMVDFAKTNNIVVGPGRGSAAGSLVAYLLGIT
DIDPIKYELLFERFLNPNRMTMPDIDIDFSDTRREEVVDYVQRKYGSEHVAQIITFGTFA
ARSLMRELIKTMDINKQDAAFVLRHIPVQSKKNLVQIVQDSSALKDYIKHSEVLRRLFKV
ATVLEGIPRHISTHAAGIVISKEPLMEYAPLTSGAGTMYLTQYAMNDVEAIGLLKIDLLG
LRNLTLIEQILQKIRYEYKKAVSLEEIPQEDRKTFLLLQQGRTNGVFQLESQGMKQVLQD
LKPTHFEDIVAVNALYRPGPMDFIKTYINRKHGVEKISYPHPDLATILEKTYGVLIYQEQ
LMQIAHRIAGFSLGQADLLRRAVSKKQEEVMEEQKSAFINGCIQQGYSQSVANELFAWIV
RFSNYGFNRSHAVAYSRISYQLAYLKCHYPQVFFAELLSASMQQHQKITLYRREIKELHI
KLLGPSINNSFGKYAVEGKHIRMGLLQIKGVGNQAVSEIIRARKERPFQNLFDFCLRTSL
KVINRTIIELLVLSGAFDELHKNRASLLATIDQAIEQGELFGEFQEQVSLLTNNLELEGD
YVEIEDFSVIKKLSDEKELLGIYISSHPVTVYRKQLQRAGYITIDAARKRGHGFKHRSAC
VIQSIKTIRTKRGDPMAFITISDETDEMEAVVFPELYRQVHRWWEEGMLVVAKGKLEARS
NGLQTLLSAIQSFEESVLEDKTSTDRLFIKLTGKDIKADLAKISEVARYFPGNTPVIVFQ
ESLQQTYQLSKEYNLAPNLLCIQRLQDYFGIHQVVYDKVTI
NT seq
3366 nt
NT seq
+upstream
nt +downstream
nt
atggtttttacacatttacaaatacgcagtagctatagcttgttaaaaagtacaattacc
attgaagaattggtgcaacgagcggcagaacttggttatactgctttagcactaacagat
gaacaagtgcttcatggggcgatcaagttttataaagctgcaaagaataacggtttgaag
ccaattattggtttgactattttagtaggcgatagccaagaagaagctcacgaaatggtt
attttagcgaaatcaaatcaaggttttcaagaactaattaaattaagtacctggctaaga
actgaagaactgtctttcatagaagtggaacagctcttaacatatactgcagattgtgtc
ggcattctctctttcaatcatggcaatatagtaaaacaattgcgaaataaatcctttgtt
gaactgaatgaatatatatccgcatatagacaagcttttggtgagaacgacttttatata
gcattagagtcttatggcgatggaagtaatcacccatctttttttgcagaggtaaaacag
tttcaagaaatgtatcatgattccgttgtggctatgcatgatgttcgatatttgaataaa
aaagatgtgcttgcgtatgattgtttacgggcgatgaaagtacagcgaatttgggatggc
acttatgttgatgataaatggcgtaatcatcatttgtgttcagaaaaggaaatgcaacag
tatttttctgagtggcctgaggcggttgaagaaactgcaagcattgtagaaaaatgtaat
ttaaatattaattttgaacaacaacatctgccttcatttccgcttccagaaaaccaacag
cctcattgttatttaacagagaaatgttttgcagttttatcacaaaaatatacaaaagta
acagatgagatccgagaacgtttacatcatgaacttaatattattgaacaaatggggttt
agtgattatttcttaattgttgcagatatggttgattttgcaaaaacaaataacattgtc
gttgggcctggaagaggatcagcagctggttctttggtagcttatttattaggaattaca
gatattgaccctatcaaatatgagttgttatttgaacgttttcttaacccaaatcgaatg
acaatgcctgatattgatatcgacttctcggatacacgtagagaggaagttgtggattat
gtacaaaggaaatatggctcagagcacgtagcgcaaatcattacatttggaacgtttgct
gcccgctctttaatgcgcgagcttataaaaacgatggatattaataaacaagatgctgct
tttgtgttacggcacattccagtgcagtcgaaaaaaaatcttgtgcaaattgttcaagat
tcaagtgcattaaaagattatataaagcattcggaagtgctacgtcgtttgtttaaggta
gctacggtgctagaaggtatccctagacatatttctactcatgcagctggaattgttatc
tctaaagaaccgcttatggaatatgcacctttaacttctggtgctggtacaatgtattta
acacaatatgcaatgaatgatgtcgaagctataggtttattaaaaattgacttattaggc
ttacgaaatttaactctcatagaacaaatactgcaaaaaatacgttacgaatataaaaag
gctgtctcattagaagaaattcctcaagaagatcggaaaacctttttattgttgcaacaa
ggaagaacaaacggtgtgtttcaattggaatcacagggaatgaagcaagtattacaagat
ttaaagccaactcattttgaagatatagttgcagttaacgcattatatcgtcctggacca
atggatttcattaaaacttatataaaccggaagcatggtgtagaaaagatttcttatcca
catccagatctcgcaactattttagaaaaaacctatggtgtgttaatttaccaggaacaa
cttatgcaaattgctcatcgcattgctggtttctcccttggacaggctgacttacttcga
agggcagtaagtaaaaaacaagaagaggtcatggaagaacaaaaatccgcgtttattaat
ggatgcatacagcaagggtatagtcaatcggtagcaaatgaattatttgcttggattgtc
cgattttcgaattacggatttaatcggagtcatgctgtggcttatagtcgtatttcttat
cagctagcatacttaaaatgtcattatccgcaagtttttttcgctgaattattaagtgct
tcgatgcaacaacatcagaaaattactttgtatcggagagaaataaaggaactgcatata
aaattacttggtccatcgatcaataatagttttggaaaatatgcagtcgaaggaaaacac
atccgaatgggtttgttacaaattaaaggggtaggaaatcaggcagtttccgaaattatt
cgagcacgtaaagagcgaccttttcaaaatttattcgacttctgcttacgtacttcctta
aaagtaattaaccgaacaatcattgagctattagttctatcaggagcttttgatgagctg
cataaaaatcgtgctagcttattagcaactattgaccaagcaatcgagcaaggtgagttg
tttggtgagttccaagagcaggtaagcttactaacgaacaaccttgaattggaaggcgat
tatgtagaaatagaggatttctcggtaataaaaaaactatctgatgaaaaagaattactc
ggtatatatatatctagtcatcctgttacagtttatcgaaaacaactacagcgagcaggg
tatattaccatagatgcagctagaaaaagagggcatggttttaaacatagaagtgcatgt
gttattcaatctatcaaaactatccgtacaaaacgtggcgacccaatggcctttattacc
attagtgatgaaacagatgaaatggaggcagttgtctttcctgaattatatcgacaagtc
catcgttggtgggaagaaggtatgctagtagtagcaaaaggtaagctggaggctagaagc
aatggactacaaacattattatctgctatccaaagttttgaagagtctgttttagaagat
aaaacaagcacagatcggctgtttataaaattaacaggaaaagatattaaagcagactta
gctaaaattagcgaggtagctcgttatttccctggaaatactccagtaattgtttttcaa
gaaagtctacaacaaacgtaccaattatccaaggaatacaaccttgcaccgaatttactt
tgcatccagcgtttacaagactacttcggtatccatcaagttgtatatgacaaagtgact
atttag
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