Virgibacillus dokdonensis: A21D_03209
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Entry
A21D_03209 CDS
T05261
Symbol
cshB
Name
(GenBank) DEAD-box ATP-dependent RNA helicase CshB
KO
K18692
ATP-dependent RNA helicase CshB [EC:
5.6.2.7
]
Organism
vpn
Virgibacillus dokdonensis
Brite
KEGG Orthology (KO) [BR:
vpn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vpn03019
]
A21D_03209 (cshB)
03009 Ribosome biogenesis [BR:
vpn03009
]
A21D_03209 (cshB)
Enzymes [BR:
vpn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
A21D_03209 (cshB)
Messenger RNA biogenesis [BR:
vpn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
A21D_03209 (cshB)
Ribosome biogenesis [BR:
vpn03009
]
Prokaryotic type
rRNA helicases
A21D_03209 (cshB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_RecD
SWI2_SNF2
AAA_22
P-loop_SecA
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
AUJ26249
UniProt:
A0A2K9J2U7
LinkDB
All DBs
Position
3469916..3471226
Genome browser
AA seq
436 aa
AA seq
DB search
MNYTFQDFSFAPVMEQVIKQLDFHEPTAIQKQVIPAVLEGKSVVGQSKTGSGKTHAFLLP
LLNAIDENKQQVQVVITAPTRELATQLYNEVKQITRYADKNEIWTAKLLVGGTDKQKMME
KLKQPPKIVVGTPGRILDMIKENAISIYTANSFVIDEADLMLDLGFIQEVDQLLVRSHPK
VQILVFSATIPQPLYYFLKKYLQQPVHVKISDDIYPEKMEHRLIYLKHRNEASIIAEISK
VIQPYLAIIFTNGKEKANELAASLQEKGMEVGLIHGGLSPRERKRVLKEIQNLRYQYIVA
TDLAARGIDIKGVSHVINAQLPKEEDFYIHRVGRTARAGMEGTAISIYQSDDLSLIEKLE
EKGLAFMYVDVRNGEWQDAKPWNQRVLRTKQGTDMDKEAWKRVKKAQKVKPGYKKKMKRE
KEIIKKRLSKTKHKKK
NT seq
1311 nt
NT seq
+upstream
nt +downstream
nt
atgaattatacatttcaagacttttcttttgctccagttatggagcaagtaattaaacaa
ttagattttcacgaaccaacagcaattcaaaaacaggttattccagcagttttagagggt
aagagtgtagttggccaatcaaaaacaggttcaggaaaaacgcatgcgtttctattgccg
ttgctaaatgcaatcgatgagaataaacagcaggtgcaagttgtgataacagctccaacg
agggagcttgcaacacagttatataatgaagtaaaacaaatcactcgctatgcggataaa
aacgaaatttggacagcaaagctattggttggcggtactgataaacaaaaaatgatggaa
aaattaaagcaacctcctaaaattgttgtcggaacacctggaagaatattagatatgata
aaggagaacgcaatatctatttacactgcgaatagttttgttatcgatgaagcggattta
atgttggatttaggttttattcaagaagtggatcagttactcgttcgctctcatcctaag
gttcaaattttggttttttccgcaacaatcccacaaccattgtattattttttaaagaaa
tatttacaacagccagtacatgtaaaaatttccgatgacatttatccagaaaagatggag
catcgactaatttatttaaaacatagaaatgaagcgtcaattattgctgagatttcaaag
gttattcagccatatttagcgattatttttacaaatggaaaagaaaaagcgaatgagtta
gcagcctctctgcaagagaagggaatggaagtggggctcattcatggcggtttatctcct
cgtgaacgtaagcgtgtattaaaagaaattcaaaacttacgctaccaatatattgtagct
acggatctcgctgcccgcggtattgacattaaaggagttagtcacgtaattaatgcacag
ctaccgaaagaagaggatttttatattcatcgggtcggcagaactgcacgtgcgggtatg
gaaggaacagcaatcagcatttaccaatctgatgatttgtcgctcattgaaaagctagaa
gaaaaaggtttagcttttatgtatgtagatgttcgcaatggggagtggcaggatgcaaaa
ccttggaatcaacgtgtgcttcgtacaaaacagggcactgatatggataaagaagcgtgg
aaaagagtaaaaaaggcacagaaagtaaagcctggatataagaaaaaaatgaaacgggaa
aaagagataattaaaaaacggttatctaaaaccaagcataaaaagaaatag
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