Virgibacillus dokdonensis: A21D_03659
Help
Entry
A21D_03659 CDS
T05261
Symbol
topA
Name
(GenBank) DNA topoisomerase 1
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
vpn
Virgibacillus dokdonensis
Brite
KEGG Orthology (KO) [BR:
vpn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vpn03032
]
A21D_03659 (topA)
03400 DNA repair and recombination proteins [BR:
vpn03400
]
A21D_03659 (topA)
Enzymes [BR:
vpn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
A21D_03659 (topA)
DNA replication proteins [BR:
vpn03032
]
Prokaryotic type
DNA Topoisomerases
A21D_03659 (topA)
DNA repair and recombination proteins [BR:
vpn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
A21D_03659 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
Zn_ribbon_RPB9
Toprim_4
HypA
Toprim_2
Zn_ribbon_RPAB4
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
AUJ26693
UniProt:
A0A2K9J651
LinkDB
All DBs
Position
complement(3893958..3896036)
Genome browser
AA seq
692 aa
AA seq
DB search
MSDYLVIVESPAKAKTIERYLGKKYKVKASMGHVRDLPKSQMGVDAENNFTPKYITIRGK
GDVVKDLKSAAKKAKKIYLAADPDREGEAIAWHLAHILNIDEQSECRVVFNEITKDAIKE
SFKHPRSINMNLVDAQQARRILDRLVGYNISPLLWKKVKKGLSAGRVQSVAVKLIIDREK
EIENFIPEEYWSIDAQFLKESELFEGAFYGINGKKVALKTEVDVKEIKQMLQGDQFTVDK
VNKKERRRNPAQPFTTSSLQQEAARKLNFKAKKTMMVAQQLYEGIDLGRQAGGITGLITY
MRTDSTRISETAKNEANSYIHEQYGEEYLGTNKQKKQSESAQDAHEAIRPTSVLREPNSL
KAILSRDQLRLYKLIWERFLASQMAAAVMDTMTVHLLNNNVEFRATGSKIKFKGFMKVYV
EGRDDKKKDENKLLPALSEGMKVKAQEIKPNQHFTQPPPRYTEARLVKTMEELGIGRPST
YAPTLDTIQRRGYVSIDNKRFVPTELGTIVLELVEEFFPKIIDVDFTAKMENDLDAIEEG
SIEWVKIIDQFYQEFEKRLKKAEQEMEKVEIKDEPAGIDCEKCGHEMVYKMGRYGKFLAC
SNFPECRNTKPILKKIGVDCPKCKTGEIVERKSKKRRTFYGCDQYPECDFVSWDKPISRP
CPKCEALLVEKKAKKGTQIQCTNCEYKEEPQT
NT seq
2079 nt
NT seq
+upstream
nt +downstream
nt
atgtcggattatctagtgatcgttgagtcgcctgcgaaggcgaagacgattgaacgttat
ttaggaaaaaaatataaagtaaaggcctcgatggggcatgtaagagatttaccaaaaagt
cagatgggtgtagatgcagaaaataattttactccaaagtacattactatacgaggaaag
ggcgatgtggttaaggatttaaaatctgcagctaaaaaggccaaaaaaatatacctcgca
gcggaccctgacagggaaggggaagcaatagcgtggcatttagctcatattttaaacatt
gatgagcaatcagaatgcagggttgtatttaatgaaattaccaaagacgccattaaagag
tcgtttaagcatcctagatctataaatatgaatttagttgacgcgcaacaagcaagaagg
atacttgaccgattggtagggtacaatatcagtccactgctatggaaaaaagtcaaaaaa
ggtttaagtgctgggcgcgtgcaatctgttgcagtgaaattaatcattgatcgagaaaaa
gaaattgaaaactttatccctgaagaatattggtccattgatgcgcagtttttaaaagaa
agtgaattatttgaaggggccttttacgggataaatggaaaaaaagtagcattaaaaaca
gaggtagatgtaaaagaaattaaacagatgcttcaaggtgatcagtttactgtagataaa
gtaaacaaaaaagaacgtagaaggaatccagctcaaccatttactacttcttccttacag
caggaagctgctagaaagctgaactttaaagcaaagaaaacaatgatggttgctcagcaa
ctttatgaaggaattgacctcggtcgtcaagcaggtggtataactggactaattacgtat
atgcgtacagattcaacaagaatctctgaaacggcaaaaaatgaagcgaactcgtatatt
catgaacaatatggagaagagtacttagggacaaataaacaaaagaaacaatcagagtct
gcgcaagatgcccatgaagctattcgcccgacttctgtgttaagagagcctaattcactt
aaagctatcctatcaagagatcaacttcgattatataaattaatttgggaacgatttttg
gctagtcagatggctgctgcggttatggacacgatgactgttcatttattaaataataat
gttgagttccgagctacaggttcaaagataaaatttaaaggttttatgaaagtgtatgtg
gaaggaagagatgataagaaaaaagatgaaaacaaactccttcctgcattatctgaaggt
atgaaagttaaggcacaggaaataaaaccgaatcaacattttacacagccaccaccaagg
tatacggaggcgagattagtaaaaacgatggaggaactaggaattggccgtccttctact
tatgcacctactttggatactattcaaagacgaggttatgtaagtattgataataagcga
tttgtacctactgaattaggtacgattgtattagaattggttgaagaattcttccctaaa
attattgatgtagattttactgcaaaaatggaaaacgatttagatgctattgaagaagga
agcatagaatgggtaaagatcattgatcaattctaccaagaatttgagaagcgcttgaag
aaggctgaacaggaaatggaaaaagtagaaataaaagatgaaccagcgggaattgattgt
gaaaaatgtggtcatgagatggtttataaaatggggagatatgggaaattcttggcttgt
tcgaactttccagaatgccgaaatacgaaaccgattttaaagaaaattggtgttgattgt
ccaaaatgtaaaacaggggaaatagttgaaagaaaatcaaagaaacgccgtactttttat
gggtgtgaccaatatccggaatgtgacttcgtttcgtgggataaacctatttctagacca
tgtcctaaatgcgaggcattactagtggagaaaaaagcgaaaaagggaacgcaaattcaa
tgtacgaactgtgaatataaagaagagcctcaaacgtaa
DBGET
integrated database retrieval system
