Virgibacillus dokdonensis: A21D_03791
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Entry
A21D_03791 CDS
T05261
Symbol
pdhD_3
Name
(GenBank) Dihydrolipoyl dehydrogenase
KO
K00382
dihydrolipoyl dehydrogenase [EC:
1.8.1.4
]
Organism
vpn
Virgibacillus dokdonensis
Pathway
vpn00010
Glycolysis / Gluconeogenesis
vpn00020
Citrate cycle (TCA cycle)
vpn00260
Glycine, serine and threonine metabolism
vpn00280
Valine, leucine and isoleucine degradation
vpn00310
Lysine degradation
vpn00380
Tryptophan metabolism
vpn00620
Pyruvate metabolism
vpn00630
Glyoxylate and dicarboxylate metabolism
vpn00640
Propanoate metabolism
vpn00670
One carbon pool by folate
vpn00785
Lipoic acid metabolism
vpn01100
Metabolic pathways
vpn01110
Biosynthesis of secondary metabolites
vpn01120
Microbial metabolism in diverse environments
vpn01200
Carbon metabolism
vpn01210
2-Oxocarboxylic acid metabolism
vpn01240
Biosynthesis of cofactors
Module
vpn_M00009
Citrate cycle (TCA cycle, Krebs cycle)
vpn_M00011
Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate
vpn_M00307
Pyruvate oxidation, pyruvate => acetyl-CoA
vpn_M00621
Glycine cleavage system
Brite
KEGG Orthology (KO) [BR:
vpn00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00010 Glycolysis / Gluconeogenesis
A21D_03791 (pdhD_3)
00020 Citrate cycle (TCA cycle)
A21D_03791 (pdhD_3)
00620 Pyruvate metabolism
A21D_03791 (pdhD_3)
00630 Glyoxylate and dicarboxylate metabolism
A21D_03791 (pdhD_3)
00640 Propanoate metabolism
A21D_03791 (pdhD_3)
09105 Amino acid metabolism
00260 Glycine, serine and threonine metabolism
A21D_03791 (pdhD_3)
00280 Valine, leucine and isoleucine degradation
A21D_03791 (pdhD_3)
00310 Lysine degradation
A21D_03791 (pdhD_3)
00380 Tryptophan metabolism
A21D_03791 (pdhD_3)
09108 Metabolism of cofactors and vitamins
00785 Lipoic acid metabolism
A21D_03791 (pdhD_3)
00670 One carbon pool by folate
A21D_03791 (pdhD_3)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
vpn04147
]
A21D_03791 (pdhD_3)
Enzymes [BR:
vpn01000
]
1. Oxidoreductases
1.8 Acting on a sulfur group of donors
1.8.1 With NAD+ or NADP+ as acceptor
1.8.1.4 dihydrolipoyl dehydrogenase
A21D_03791 (pdhD_3)
Exosome [BR:
vpn04147
]
Exosomal proteins
Exosomal proteins of breast cancer cells
A21D_03791 (pdhD_3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pyr_redox_2
Pyr_redox_dim
Pyr_redox
Pyr_redox_3
GIDA
FAD_oxidored
HI0933_like
FAD_binding_2
3HCDH_N
AlaDh_PNT_C
NAD_binding_8
Amino_oxidase
UDPG_MGDP_dh_N
FAD_binding_3
Thi4
Motif
Other DBs
NCBI-ProteinID:
AUJ26825
UniProt:
A0A2K9J539
LinkDB
All DBs
Position
complement(4037975..4039381)
Genome browser
AA seq
468 aa
AA seq
DB search
MVVGDFPIEVDTLVVGAGPGGYVAAIRAAQLGQKVTIADKGALGGVCLNVGCIPSKALIQ
AGHLAEQAHGNEEMGIKTENVSVDFSKVQEWKASVVNKLTSGVEGLLKGNKVDIVKGEVY
FVDKNTAKIMDEKNSQTYTFNHCIIATGSTPIEIPNFKFSDRVLDSTGALNLKEIPKKMV
VIGGGYIGTELGTAYANFGTEIVVLEGAKEILGGFEKQMSQVVKKRLKKKDVTIITEAMA
KGVEESKDGVKVTYEVKGKEETVEADYVLVTVGRRPNTEDIGLEQVGIEKDERGLIKIDN
QCRTNVDNIYAIGDIVAGPPLAHKASYEGKVAAEAISGEKAVIDYLSMPAVVFSDPELAT
VGYSEQEAKDAGFDVKAAKFPFAANGRALSLNDSDGFMKLITRKDDGLVIGAQIAGPNAS
DMISELGLAIEAGMTAEDIALTIHAHPTLGEITMEAAEVALGTPIHML
NT seq
1407 nt
NT seq
+upstream
nt +downstream
nt
atggtagtaggagattttccaattgaagtagacacactcgttgttggagcaggtcctggt
ggttatgttgctgctattcgtgctgcacagttaggccaaaaagtaacaattgctgataaa
ggcgctttaggtggggtttgtttaaacgttggatgtattccatccaaagctttaatccaa
gctggacatttagctgaacaagctcatggaaatgaagaaatgggaattaaaacagaaaat
gtttctgttgacttttctaaagtccaagagtggaaagcaagtgtcgttaacaagctgact
tctggtgtggaaggcttgttaaaaggaaacaaagtggatattgttaaaggtgaagtatac
tttgtagataaaaacactgcaaaaattatggatgagaaaaattctcaaacatataccttt
aatcattgcattattgctacaggatcaacaccaattgaaatccctaactttaaattttca
gatcgagtattggactcgactggtgctttaaacctgaaagaaattccgaagaaaatggta
gttatcggtggcggatatattggtacggagcttggaactgcttatgcgaatttcggaaca
gaaattgttgttcttgaaggtgcgaaagaaatcttaggcggttttgagaagcaaatgagt
caagttgtgaaaaaacgtttgaagaaaaaagacgttacaattattacagaagcaatggct
aaaggtgtagaagaatctaaagacggtgtcaaagtaacgtatgaagtaaaaggtaaagaa
gaaaccgttgaagcagactatgtattagttacggttggccgccgtccaaatacagaagat
attggcttagagcaggttggcattgaaaaagatgaacgtggactaattaaaattgataat
caatgtcgcacgaatgttgataacatctatgcaataggtgatattgttgccgggcctcca
ttagcacataaagcatcctatgaaggaaaagttgctgcagaagctatcagtggagaaaaa
gctgtaattgattacttaagtatgcccgcagttgtgttctcagatccagaattggctacg
gtcggttattccgaacaagaagcgaaagatgctggatttgatgtcaaagctgctaaattc
ccatttgcagctaatggccgtgctctttcattaaacgatagtgatggatttatgaaacta
attactcgtaaggacgatggcctagtaatcggtgcacaaattgctggaccaaatgcaagt
gatatgatttctgaattaggtcttgcaattgaagctggtatgacagcagaagatatcgca
ttaacgatccatgctcatccaacattaggtgaaatcaccatggaagctgctgaagtagct
ctaggtacaccaattcatatgctataa
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