Vanderwaltozyma polyspora: Kpol_1035p20
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Entry
Kpol_1035p20 CDS
T01049
Name
(RefSeq) hypothetical protein
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
vpo
Vanderwaltozyma polyspora
Pathway
vpo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vpo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Kpol_1035p20
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vpo03019
]
Kpol_1035p20
03041 Spliceosome [BR:
vpo03041
]
Kpol_1035p20
03009 Ribosome biogenesis [BR:
vpo03009
]
Kpol_1035p20
03016 Transfer RNA biogenesis [BR:
vpo03016
]
Kpol_1035p20
Enzymes [BR:
vpo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
Kpol_1035p20
Messenger RNA biogenesis [BR:
vpo03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
Kpol_1035p20
Spliceosome [BR:
vpo03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
Kpol_1035p20
Complex C
U4/U6.U5 tri-SnRNP related factors
Kpol_1035p20
Ribosome biogenesis [BR:
vpo03009
]
Eukaryotic type
Pre-60S particles
Helicases
Kpol_1035p20
Transfer RNA biogenesis [BR:
vpo03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
Kpol_1035p20
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
Death_3
YodE
AAA_22
AAA_16
Helicase_dom4_arc
Motif
Other DBs
NCBI-GeneID:
5545412
NCBI-ProteinID:
XP_001645065
UniProt:
A7TKI5
LinkDB
All DBs
AA seq
1077 aa
AA seq
DB search
MSDLFDVFGENPDQAIDVPIEELEAEYQTNETTPTEVSEANEKRQRPVSDDESNESFGAQ
VDKKKLKHGAKLIDEKKKSLVVPVVADSFEQEESREVEASTGLTNGATAPVEEDGKVKLK
HQVRHQVALPPNYDYQPIGEHKRQNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAG
KTVVAEYAIAQSLREKQRVIYTSPIKALSNQKYRELLAEFGDVGLMTGDITINPDAGCLV
MTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDKVRYVFLSATI
PNSMEFAEWICKIHSQPCHIVYTDFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKA
MASITNSTGDDPNSADSRGKNGKSFKGGSSKGDAKGDIYKIVKMIWKKKYNPVIVFSFSK
RDCEELALKMSKLDFNSDDEKDALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHH
SGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGKQFRWVSGGE
YIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKGQADRLDSAFHLGYNMILNLMRV
EGISPEFMLENSFYQFQNVISVPVMEKQLVELQNEVDEIYVEEEDSIKEYYDVKKTLETY
KQDLRHIITHPANILSFLQPGRLVKVEVGEKQDYGWATVIDFAKRVNKRDPSAIYTDHES
YLVNVVVNTMYVDAPINLIKQFNPALPEGIRPAAEGEKSICCILPVTLESVTSVGNLRLF
MPKDIKASGQKETVGKSLQEVQRRFPNGIPEIDPVKNMKIDDEDFHKLLRKINVLESKLN
SNPLTDSIRLPELYEKYSKKHTINDDIKKLKTKINESQAVIQLDDLRKRKRVLRRLGFCT
PSDIIELKGRVACEISSGDELLLTELIFNGNFNELTPEQAAALLSCFAFQERCKEAPRLK
PELGEPLKAMREVAAKIAKVMKDSKIEVVEKDYVESFRHELMEVVYEWCKGATFTQICKM
TDVYEGSLIRMFKRLEELVKELVDVSNTIGNTALKEKMEAILKLIHRDIVSAGSLYL
NT seq
3234 nt
NT seq
+upstream
nt +downstream
nt
atgagtgacttgtttgatgtctttggagaaaatcctgatcaagctatagatgttccaatt
gaagaactagaggcagaatatcaaaccaatgagactacaccaactgaagtaagtgaagca
aatgaaaaaagacaaagacctgtttcagatgatgaatcaaatgagtcttttggtgctcaa
gttgataagaagaagttgaaacatggtgccaagttgattgatgagaagaaaaagtctttg
gttgtaccagtagtggcagattcttttgaacaagaagaatcaagagaagtcgaggcctct
acaggtctaaccaatggtgctacagctccagttgaagaagatggtaaagtcaaattgaag
catcaagttcgtcaccaagttgcacttccaccaaattacgactatcaacctatcggtgaa
cacaagagacaaaacgaagctcgtacctatccttttactttggatcctttccaagatact
gctatttcttgtattgatagaggtgaatccgtgttggtttctgctcatacttcggcaggt
aagactgtcgttgcagaatatgcaattgctcaatctttaagagagaaacaaagagttatt
tatacatcaccaattaaagcattatctaaccaaaaatatagagaattattggctgaattt
ggtgatgttggtttaatgacaggtgatatcactataaacccagatgctggttgtttagtt
atgactactgaaattttaagaagtatgttatacagaggtagtgaagttatgagagaagtc
gcttgggttatctttgatgaggtccattatatgagagataaagagcgtggtgttgtttgg
gaagaaactattattctgttaccagataaggttcgttatgttttcttatctgccacgatt
ccaaattcgatggaattcgctgaatggatttgtaaaattcattctcaaccatgtcatatt
gtttacactgatttccgtccaactccattacaacattacttattcccagcacatggtgat
ggtatttatttggtagttgatgaaaagagtacttttagagaagaaaatttccaaaaggca
atggcttccattaccaacagcacaggtgatgatccaaattcagctgatagcaggggaaaa
aatgggaaaagcttcaaaggtggttcttctaaaggtgacgctaaaggggatatttacaaa
atcgttaaaatgatttggaagaaaaaatataacccagttattgtcttttcatttagtaaa
cgtgattgtgaagaattggctttgaaaatgtcaaaattggatttcaactctgatgatgaa
aaggatgctttaacaaaaatctttaacaacgcaattgctttacttccagaaacagataga
gaacttcctcaaatcaagcatattttacctttgttaagaagaggtattggtatccatcac
tctggtttgttaccaattttaaaagaagttattgaaattttattccaagaaggtttctta
aaggtattgtttgctactgaaactttctctattggtttgaatatgcctgctaaaactgtt
gtattcacttctgtcagaaagtgggatggtaagcaattccgttgggtttccggtggtgaa
tatattcaaatgtcaggtcgtgctggtcgtcgtggtttagatgaccgtggtattgtcatc
atgatgattgatgaaaaaatggagccacaagtagcaaaaggtatggtcaagggccaagcc
gatagattggattcggcattccatctaggttataatatgatattgaacttgatgagagtt
gaaggtatttctcctgaatttatgctagaaaattccttttaccaattccagaatgtcatt
tctgtcccagttatggaaaagcaattggtagaattacaaaatgaagttgatgaaatttat
gttgaagaagaggatagtattaaagaatattatgatgtcaaaaaaactcttgaaacctat
aagcaggatttacgtcatatcattacccaccctgctaatattttaagttttttgcaacct
ggtagattagttaaggtcgaggttggagaaaaacaagattatggttgggctactgtcatc
gactttgctaaacgtgtaaacaaacgtgacccatctgctatttatacagatcatgaatcg
tatcttgttaatgttgttgtcaatacaatgtacgttgatgctccaattaatttaattaaa
caatttaatccagcattgccagagggtattcgtcctgctgcagaaggtgaaaagtcgata
tgttgtattcttccagttactttagagtccgttactagtgtaggtaatttgagacttttc
atgccaaaggatataaaggctagtggccaaaaggaaactgtaggaaagtctcttcaagaa
gtacaaagaagattccctaatggtattcctgaaattgatccagttaaaaatatgaagatt
gacgatgaagacttccataagcttctaagaaaaatcaacgttttagagtctaaattaaac
tctaatcctttaactgattcaattagacttccggaattatatgaaaaatatagtaagaaa
catactattaacgatgatattaaaaagctaaagacaaaaattaatgaatcacaggcggtt
atccaacttgacgacctgcgtaagagaaagagagtattaagaagattaggcttctgtact
ccaagtgatatcatcgaattaaagggtagagttgcctgtgaaatatctagtggtgacgaa
cttttgttaaccgagctgatattcaatggtaactttaatgaattgactcctgaacaagca
gcagcattgctatcttgttttgctttccaagaaagatgtaaagaagctccaagattgaaa
cctgaattgggagaacctttgaaagctatgagagaagtagcagcaaaaatcgcaaaggtt
atgaaggattccaaaattgaggttgttgaaaaagattacgtggaaagcttcagacatgaa
ttaatggaagtcgtatatgaatggtgtaaaggtgccactttcactcaaatttgtaaaatg
acagacgtttatgagggttccttaattagaatgtttaagagacttgaagaattagtaaag
gaattggtcgatgtatcaaataccattggtaacactgcattaaaggaaaaaatggaagcc
atcctaaaattaatccacagagatattgtttctgctggttcattgtatttatag
DBGET
integrated database retrieval system
