Vanderwaltozyma polyspora: Kpol_1043p42
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Entry
Kpol_1043p42 CDS
T01049
Name
(RefSeq) hypothetical protein
KO
K12585
exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-]
Organism
vpo
Vanderwaltozyma polyspora
Pathway
vpo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vpo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Kpol_1043p42
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vpo03019
]
Kpol_1043p42
Messenger RNA biogenesis [BR:
vpo03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
Kpol_1043p42
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
Rrp44_CSD1
Rrp44_S1
PIN_4
OB_Dis3
CSD2
OB_HELZ2
Dis3l2_C_term
OB_RNB
Motif
Other DBs
NCBI-GeneID:
5546106
NCBI-ProteinID:
XP_001645710
UniProt:
A7TIR0
LinkDB
All DBs
AA seq
988 aa
AA seq
DB search
MSVSAVSGGRKRLSEGLTVTQKVFVRSRNGGATKIVREHYLRNDIPCLSRSCSICPTIVV
PDAKNELPKFVLSESPQDLKNIGKHYTVLDTNIVLQAIDLLENPNCFFDVIVPQIVLDEV
RNKSYPVYTRLRNLCRDSDGKKRFIVFHNEFSEATFVERLKDESINDRNDRAIRKTCEWY
LDHLAKSEIKIILVSNDRLNRISASDEKFITKSLYEYVELLPNSDEVKESMPNLDSSQYN
KDAESINEFSYPEFYPTSRIMGGLKNGSLFQGNIQISEYNFLEGSVNIPSFSRPVLVVGQ
KNLNRAFNGDQVIVELLPESQWKAPSTVALDAEHYDVNDNPENDNEVDANLIADSQRRLL
AENAITAQKSNKVQPTARVVAIPRRSWRQYVGQIAPNSVDTQTGGTQNVFVILMDKCLPK
IRIRTRRATELLSKRIVVSIDSWPSNHKFPLGHFVRNLGGVEEAQAETEALLLEHDVEYR
PFSKKVLECLPEEGHDWKAPVDLKSQDAIAKDPLLQKRVDLRDKLICSIDPPGCVDIDDA
LHAKKLPNGHFEVGVHIADVTHFVKAGTPLDAEGASRGTSVYLVDKRIDMLPMLLGTDLC
SLKPYVDRFAFSVIWELDENADIVKVDFSKSVIRSREAFSYEQAQLRIDDKNQTDELTLG
MRALLDLSIKLKQKRLDAGALNLASPEVKVHMDSETSDPGEVEIKKLLATNSLVEEFMLL
ANISVARKIYDSFPQTAMLRRHAAPPSTNFEILNEMLQKRKGLSISLESSKALADSLDRC
VDKKDPYFNTLVRIMSTRCMMAAQYFYSGAYSYSDFRHYGLAVDIYTHFTSPIRRYCDVV
AHRQLAGAIGYEPLDLSHRDKNKMEMICKNINRRHRNAQFAGRASIEYYVGQVMRNNESV
ETGYVIKVLNNGIVVIVPKFGVEGLIRLENLTKDTSSANFDEVDFKLTFTQIDTGKQREI
HVFDKVEVQLKSVLDPVTSKRKAELLLK
NT seq
2967 nt
NT seq
+upstream
nt +downstream
nt
atgtctgtaagtgctgtctcaggtggtagaaaaaggctatctgaagggttaactgttact
caaaaagtttttgttagatctcgtaatggtggtgctactaaaattgtaagagaacattac
ttgagaaacgatatcccatgtttatctagaagttgttccatatgtcctactatcgtggtt
cctgatgctaaaaatgaattgccaaagttcgtactatctgaatctcctcaagatttaaaa
aatattggtaaacattataccgtattggacaccaatattgttcttcaagctattgactta
ttggaaaacccaaattgttttttcgacgtcattgttcctcaaattgtcctggatgaagtc
agaaataaatcttatcctgtctacacaagattgagaaatttatgtagagatagtgatggt
aaaaagagattcattgttttccacaacgaattcagcgaagctacttttgtagaaagattg
aaggatgaatcaatcaatgatagaaatgatagagctataaggaaaacttgtgaatggtat
ttagatcatttagcaaaatcagagattaaaattattttggtttcaaatgatagattgaat
agaatttcagcttctgatgaaaaatttattactaaatcattgtacgaatatgtagaatta
ttaccaaattctgacgaggtaaaggaatcaatgccaaatttggattcttctcaatataat
aaagacgcagaatctattaacgaatttagttatcctgaattttatccaacttcaagaatt
atgggtggtttgaaaaatggttcgttattccaaggtaatatacaaatttcagagtataat
tttctggaaggttctgtaaatataccttccttttccagacctgttcttgtcgttggtcaa
aagaatttaaatagagcttttaatggtgatcaagtcattgtagaactactaccagaatct
caatggaaggctccttcaactgtagcactagacgctgaacattatgatgttaatgataac
ccagaaaatgacaatgaagtcgatgctaatctaatagcagattcccaaagaagattattg
gctgaaaatgcgataaccgctcaaaaatcaaacaaggttcaacctactgcaagagttgtc
gctataccaagaagatcttggagacagtatgttggtcaaattgctccaaattctgtagat
acccaaactggtggaacccaaaatgtttttgttattttaatggacaaatgcttacctaaa
attagaatacgtactagaagggccactgaattattaagtaaaagaatcgttgtttccatc
gattcgtggccttcaaatcataagttcccattaggtcatttcgttagaaatttaggtggt
gttgaagaagcccaagctgaaactgaagctcttttgttagaacatgatgtagaatataga
ccattttccaaaaaggttttggaatgtttaccagaggaaggtcatgattggaaggctcca
gttgacttaaaatctcaagatgctattgcaaaggatccattattacaaaaaagagtcgac
ctaagagataaattaatttgtagtatcgatccaccaggttgtgttgatattgatgatgct
ttacatgctaaaaaattaccaaatggccacttcgaagttggtgtccatatcgcagatgtt
actcattttgtaaaagctggaactccgttagatgcagaaggtgcatctagaggtacttct
gtatatttggtggacaaacgtattgatatgttaccaatgctacttggtactgatttatgt
tcattgaaaccatatgttgatagatttgcattttccgtgatatgggaattggatgaaaat
gctgatattgtgaaggtcgatttttcgaaatccgttatcagatcaagagaagcattttct
tatgaacaagctcaacttagaatcgatgacaaaaaccaaactgatgaattgacattaggt
atgagagctttgttagatttatctatcaaattgaaacaaaagagattggacgctggtgct
ttaaacttagcttctccagaagttaaagttcatatggacagtgaaacttctgatccaggt
gaagttgaaataaaaaaattattagcaactaattcgctggttgaagaatttatgttacta
gctaacatttctgtcgcaaggaaaatttatgattctttcccacaaactgcaatgttaaga
agacatgctgctccaccatcaactaatttcgaaatattaaacgaaatgttacaaaagaga
aaaggtctttctatttcattggaatcatcaaaagctttggcagattccttagaccgttgt
gttgataaaaaagatccttatttcaatactttggtacgtatcatgtctacccgttgtatg
atggctgctcaatatttctattcaggtgcttactcatattctgatttccgtcattatggt
ttagcagtggatatttatacacattttacctctccaattagacgttactgtgatgttgtt
gcacacaggcagttggcaggtgctattggttatgaacctttagatttatcccacagagat
aagaacaagatggagatgatttgtaaaaatattaatagaagacacagaaatgctcaattt
gcaggtagagctagtattgaatactatgttggccaagtcatgagaaataacgaatcggtt
gaaactggttacgttattaaagttctaaacaatggtattgttgtcatcgttcctaaattc
ggtgttgaaggtttaataagattggagaacttaacaaaagataccagttctgcgaacttt
gatgaagttgactttaaattaacttttacccaaatcgataccggtaaacaaagagaaatt
catgtctttgataaagttgaggtacaattgaaatctgtgcttgacccagtcacaagcaaa
cgtaaagccgaattattattaaaataa
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