Vanderwaltozyma polyspora: Kpol_1058p53
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Entry
Kpol_1058p53 CDS
T01049
Name
(RefSeq) hypothetical protein
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
vpo
Vanderwaltozyma polyspora
Pathway
vpo03013
Nucleocytoplasmic transport
vpo03015
mRNA surveillance pathway
vpo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vpo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
Kpol_1058p53
09122 Translation
03013 Nucleocytoplasmic transport
Kpol_1058p53
03015 mRNA surveillance pathway
Kpol_1058p53
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vpo03019
]
Kpol_1058p53
03041 Spliceosome [BR:
vpo03041
]
Kpol_1058p53
Enzymes [BR:
vpo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Kpol_1058p53
Messenger RNA biogenesis [BR:
vpo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
Kpol_1058p53
Spliceosome [BR:
vpo03041
]
Complex C
Other components
EJC/TREX
Kpol_1058p53
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
Kpol_1058p53
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
P-loop_SecA
Motif
Other DBs
NCBI-GeneID:
5545734
NCBI-ProteinID:
XP_001645374
UniProt:
A7TJT7
LinkDB
All DBs
AA seq
442 aa
AA seq
DB search
MSHEGEEDLLEYSDNEQEIQVDATNINESAVDATVSETAEGATTDSEKKGSYVGIHSTGF
KDFLLKPELARAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQL
DPVPGEVSVVVICNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTPITKDAELLKNKETA
PHIVVATPGRLKALVRDKLIDLSHVKNFVIDECDKVLEELDMRRDVQDIFRATPRDKQVM
MFSATLSEEIRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYIKLQENEKNRKLAQLLDDL
EFNQVIIFVKSTKRANELTKLLNESNFPAITVHGNMKQAERIARYKAFKEFEKRICVSTD
VFGRGIDIERINLAINYDLTTEADQYLHRVGRAGRFGTKGLAISFVSSPEDEEVLGKIQE
RFDVKIAEFPEEGIDPSTYLNN
NT seq
1329 nt
NT seq
+upstream
nt +downstream
nt
atgtcacacgaaggtgaagaagatttattggaatattctgataacgaacaagaaatccaa
gttgatgccactaacatcaatgaatctgcagtagatgctactgtttcagaaactgctgaa
ggtgcaactactgattcggaaaagaagggttcctatgttggtattcattcaactggtttc
aaagatttcttattgaaaccagagttggcaagagccattatcgattgtggttttgaacat
ccttctgaagtccaacaacatactattcctcaatctattcatggtacagatgtcttatgt
caagccaaatctggtttgggtaagactgctgttttcgtgttgtccactttacaacaattg
gaccctgttccaggtgaagtctccgttgttgttatttgtaatgccagagaattagcttat
caaattcgtaatgagtatttaagattctcaaaatatatgccagatgtgaaaactgcagtt
ttctatggtggtactccaattactaaagatgctgaattgttgaagaacaaagaaactgct
ccacatattgtcgttgctaccccaggtcgtttgaaagctcttgttagggacaaattaatc
gatctatctcatgtcaagaattttgttatcgatgaatgtgataaagttttggaagaattg
gatatgagaagagatgttcaagatattttcagagctacaccaagggataagcaagtaatg
atgttttctgctacactatctgaagagattagacctatctgtagacgtttcttgcaaaac
ccattggaaatttttgttgacgacgaagctaagttgaccttgcatggtttacaacaatac
tacataaaattacaagaaaatgaaaagaatcgtaaattagcccaattattagacgattta
gaattcaatcaagtcatcatttttgtcaaatcaacaaagagagcaaatgaattgacaaag
ttattgaatgaatcaaatttcccagctatcactgtacatggtaatatgaaacaagcagaa
cgtattgctcgctacaaagcttttaaagaatttgaaaaacgtatatgtgtttctacagat
gtttttggtagaggtattgatattgaacgtatcaatttagcaatcaactatgatttgact
acagaagctgatcaatatttacatcgtgttggtagggctggtagattcggtactaaaggt
ttagctatctctttcgtctcatctccagaggatgaggaagttttgggtaaaattcaggaa
cgttttgatgttaagattgccgaattcccagaagaaggtattgatccatccacctacttg
aacaattag
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