Veillonella parvula: Vpar_0406
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Entry
Vpar_0406 CDS
T01130
Name
(GenBank) Exonuclease RNase T and DNA polymerase III
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
vpr
Veillonella parvula
Pathway
vpr03030
DNA replication
vpr03430
Mismatch repair
vpr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vpr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Vpar_0406
03430 Mismatch repair
Vpar_0406
03440 Homologous recombination
Vpar_0406
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vpr03032
]
Vpar_0406
03400 DNA repair and recombination proteins [BR:
vpr03400
]
Vpar_0406
Enzymes [BR:
vpr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Vpar_0406
DNA replication proteins [BR:
vpr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Vpar_0406
DNA repair and recombination proteins [BR:
vpr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Vpar_0406
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
Rv2179c-like
DNA_pol_A_exo1
TRI5
RNase_H_2
SCP2
Motif
Other DBs
NCBI-ProteinID:
ACZ24090
LinkDB
All DBs
Position
491812..492441
Genome browser
AA seq
209 aa
AA seq
DB search
MLDFVALDFETANKFKNSACSLAVITVKDGQITKKAYSLIKPPFMSFDDECIEIHGIQPK
DVLHEKTFDQLWNAIYENHLKGNIMVAHNAKFDMNVLRATLDYYKIPWPELDYACTVKLS
RAVWPDLVNHKLNTMAAYIGVEFKHHYALDDAETCAKVVLEAAKLKGVNSLPDLLKITGV
PLEPFIDDKNRSAQDALHKEPEPEQMSFF
NT seq
630 nt
NT seq
+upstream
nt +downstream
nt
atgttagattttgttgcattagactttgaaacagcaaataaatttaaaaatagtgcgtgc
tccttggcggttattaccgtaaaggatggacaaattactaaaaaggcatatagtctcatc
aaaccaccatttatgagttttgatgatgaatgtattgaaattcatggtatccaaccgaag
gatgttcttcatgaaaagacctttgatcagttgtggaatgccatttatgaaaaccattta
aaagggaatattatggtggctcacaatgcgaaattcgatatgaacgtattgcgtgctact
ttagattattataaaatcccttggccagaactagattatgcatgtacagttaaactttca
cgtgctgtatggcctgatttagttaatcataagttgaatacaatggccgcatacattgga
gttgagtttaaacatcattatgcactggatgatgcggagacttgtgcaaaggttgtatta
gaagctgctaagttgaaaggcgttaatagcttaccagatttattaaagattacaggcgta
ccgttagaaccattcattgatgataaaaatcgctctgctcaagatgcattacataaagag
ccagaaccagagcaaatgtcgttcttttag
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