Veillonella parvula: Vpar_0769
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Entry
Vpar_0769 CDS
T01130
Name
(GenBank) 3' exoribonuclease
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
vpr
Veillonella parvula
Pathway
vpr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vpr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Vpar_0769
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vpr03019
]
Vpar_0769
03016 Transfer RNA biogenesis [BR:
vpr03016
]
Vpar_0769
Enzymes [BR:
vpr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
Vpar_0769
Messenger RNA biogenesis [BR:
vpr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Vpar_0769
Transfer RNA biogenesis [BR:
vpr03016
]
Prokaryotic type
tRNA degradation factors
Vpar_0769
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
KH-I_KHDC4-BBP
KH_N4BP1_2nd
Motif
Other DBs
NCBI-ProteinID:
ACZ24450
LinkDB
All DBs
Position
906755..908824
Genome browser
AA seq
689 aa
AA seq
DB search
MEQFQMDLAGRTLTIETGELAKQAGGAVMVGYGDTRVLVTATGSKEAKDIDFFPLTVDYE
EKMYAVGRLPGGFIKREARPPESAILNSRLIDRPIRPLFNKGVRNEVHVVATVMSVDQDC
DPAICGMIGASAALSISDVPWNGPIAGVRMGRINGEFVVNPTKAQLEETDLNIVVAGTKD
AILMVEGGAEEVPEDIILEVIMAAHEEIKKIVAFQEDMTAKVGKEKRVFECKDVPVEISD
AVRAYGHDKLDAAVRCADKQQRDAQENEVRADVLAHFEEIYPDNLADVNKAFDAMTKEIV
RHMITVEKIRPDGRQLDEVRPISCRTGVLPRTHGSGLFTRGQTQVLNVITVAPLSEKQTI
DGLGVETEKRYIHHYNFPSFSVGETRSSRGPGRREIGHGALAERALVPVIPSEEDFPYAL
RLVSEVLESNGSSSMASVCGSTLSLMDAGVPIKAPVAGIAMGLVTQGEHYTILTDIQGME
DALGDMDFKVAGTAKGVTAIQMDIKISGLSREILQEALEQAHKGRMHIMGIMLDTIAEPR
QQMSQYAPRIITMKIDPDKIRDVIGSGGKVIRSIIEETGAKIDIEDDGTVFIASVEQEGA
AKAQEIITNLTKEVEVGEVYLGKVTRLMAFGAFVEVLPGKEGLVHISKLAKERVENVEDV
VSVGDEIMVKVIEIDKQGRVNLSRKDCLK
NT seq
2070 nt
NT seq
+upstream
nt +downstream
nt
atggaacaattccaaatggacctagctggtcgtacgcttacgattgaaactggggaactt
gcaaaacaagctggcggtgccgtaatggttggttatggcgatactcgtgtactcgttact
gctacaggctctaaagaggcgaaggatattgacttcttcccacttacagtagactatgaa
gaaaaaatgtatgcggttggtcgtttaccagggggcttcattaaacgtgaagcacgccca
cctgagtctgcgattttgaatagccgtttgattgaccgtcctattcgtccattatttaat
aaaggtgtacgtaacgaagtacacgtagtagcaacagttatgtctgtggaccaagattgt
gatccagccatttgtggtatgattggtgcttctgcggcattgtctatttctgatgttcct
tggaatggtcctattgcaggcgttcgtatgggacgtatcaatggtgaatttgttgtaaat
ccaacgaaagcacaattagaagaaacagatcttaatatcgttgtggctggtactaaagat
gctatcctcatggttgaaggtggcgctgaagaagtaccggaagatatcattcttgaagtt
atcatggcagctcacgaagaaatcaaaaaaatcgtagcattccaagaagatatgactgca
aaagtaggtaaggaaaaacgcgtatttgaatgtaaagatgttcctgttgaaatcagtgat
gcagttcgtgcctatggtcatgataaacttgatgctgcagttcgttgtgcagataaacaa
caacgtgatgcacaagaaaatgaagtacgtgcagatgtattagctcactttgaagagatc
tacccagataacttggctgatgtaaataaagcatttgatgcaatgacaaaagaaatcgtg
cgtcatatgattactgttgaaaaaatccgtccagatggccgtcaacttgatgaagttcgt
ccaatctcttgccgtacaggtgtattaccacgtacacatggctctggcttgtttacacgt
ggtcaaactcaagtgttgaatgtcataacagtagcgcctttatccgaaaaacaaaccatc
gatggccttggtgttgaaactgaaaaacgttatatccatcattataatttcccatctttc
tccgtaggggaaactcgttcttcccgtggccctgggcgtcgtgaaattggtcatggtgcg
ttggctgaacgcgcgttggtacctgtgattccaagtgaagaggatttcccatatgctttg
cgtttagtatctgaagtattggaatctaatggttctagctccatggcttccgtatgtggt
tctacattatctttgatggatgctggtgtacctattaaagcgcctgtagctggtatcgct
atgggtcttgtaactcaaggggaacactatacaattttaacagatattcaaggcatggaa
gatgctctcggagatatggactttaaagttgctggtacagctaaaggcgtaacagcaatt
caaatggatatcaagatttctggattatcccgtgaaatccttcaagaagcattagaacaa
gctcacaaaggtcgtatgcatatcatgggtatcatgcttgatacaattgctgaaccacgt
caacaaatgtcccaatacgctccacgtattattacaatgaaaattgatcctgataagatt
cgtgacgtaatcggttctggcggtaaagtaattcgcagtattatcgaagaaacaggcgct
aaaattgacatagaagatgatggtacagtatttatcgcctctgtagaacaagaaggggct
gcaaaagctcaagaaattattacaaaccttactaaagaggttgaagtaggtgaagtatat
cttggtaaagtaactcgtctaatggcttttggcgcatttgtagaagtattaccaggtaag
gaaggtcttgtacatatttctaaactcgcgaaagaacgcgttgaaaatgtagaagacgta
gtaagtgtaggggatgaaatcatggtaaaagttatcgaaatcgataaacaaggacgtgtg
aatttgtcccgtaaagattgtttaaaataa
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