Veillonella parvula: Vpar_1386
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Entry
Vpar_1386 CDS
T01130
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
vpr
Veillonella parvula
Pathway
vpr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vpr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Vpar_1386
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vpr03019
]
Vpar_1386
03400 DNA repair and recombination proteins [BR:
vpr03400
]
Vpar_1386
Enzymes [BR:
vpr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Vpar_1386
Messenger RNA biogenesis [BR:
vpr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Vpar_1386
DNA repair and recombination proteins [BR:
vpr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Vpar_1386
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
RQC
HRDC
RecQ_Zn_bind
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
ACZ25064
LinkDB
All DBs
Position
complement(1593863..1595731)
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AA seq
622 aa
AA seq
DB search
MEQQVGGKQDVSRQHQVVTKQQALRMLETYFGYTSFRPAQEAPIASLLRNEDVIGIMPTG
AGKSICFQIPALCKAGLTIVFSPLISLMKDQVDGLLVQNIPAALINSTLTQSEFNKTMYE
VRSGKIKLLYIAPERLSSNFFCNVLRALPIAQVIVDEAHCISEWGHDFRPSYRLIGEWLN
SLPKRPIVGAFTATATKYVENDIKKLLGLDKANVYVTGFDRPNLSFSVIRTPKRMDYVVH
YVRQHANENGIIYCATRKDVDRVYENLTRAGIKVGHYHGGLNDEVRREMQNAYADDKLQV
MVATNAFGMGIDKSNVRYVLHYQMPRNMESYYQEAGRAGRDGAPAECILLYSGQDVQVHK
YLIEQSIETPERQNVELRKLQSMIDYCFCSNCLRKYMLNYFGESTIWTTCDNCSSCKGSA
DKVNVTKEAKAIFRAIMGTDERYGASMITSIVRGERTDRITRAGHDALPVFGLLSNVDEK
SIKGLIQQFVASGYLRSSTGKYPVLSLTAGAEEVLAGRKEVEEIRQHVSVPSRTSKSAGS
VVRGKSSSTSGGLFEHLRQHRKRLAEKAGLRPYLIFPDTVLIDLANLRPTTLGEFGNVKG
VGEAKLKKYGLTFLQVIAEYKG
NT seq
1869 nt
NT seq
+upstream
nt +downstream
nt
atggaacaacaggtaggcggaaaacaagatgtatctagacaacatcaagttgtgacgaaa
caacaagcattgcgcatgttggagacctactttgggtatacctcctttagaccagctcaa
gaggctcctattgcatccttgttgcggaatgaagatgtaattggaatcatgccgacaggg
gctgggaagtctatctgtttccagatacctgcgctctgtaaggcgggcttgactattgtg
ttttctcctctcatttctcttatgaaagaccaagtggatggtctcttggtgcagaatata
ccagcagcgctcatcaatagtacacttacacaatctgagtttaataagaccatgtacgaa
gtacgtagtggtaagattaaactcttatatattgcaccagagcggttgagctctaatttt
ttctgtaatgtactgcgagcgttaccgattgctcaagtcattgtggacgaggctcattgt
atctctgagtggggtcatgattttagaccgtcttatcgccttatcggtgagtggctcaat
tcattgccaaagagacctatcgtgggggctttcacagcgacggcgacgaaatatgtagaa
aacgatataaaaaaattattaggcctagataaggctaatgtatacgtgacgggttttgat
cggcctaatttatccttctctgttatccgcacaccaaagcggatggattacgttgttcat
tatgtgcgtcagcacgccaatgaaaatggcattatctactgtgcaacgcgcaaggatgta
gatcgtgtgtatgaaaatttaacccgtgcgggcatcaaggtgggacattaccacggagga
ctcaacgatgaggtgcgccgtgaaatgcagaatgcctacgcagacgataaattgcaggtt
atggtggcgacgaatgcctttggtatgggtattgataaaagcaatgtacgctatgtacta
cattatcaaatgccgcgtaatatggagtcctattatcaggaggcaggacgagctggccgt
gatggggcacctgctgaatgtatcttgctttatagtgggcaggatgtacaggttcataag
tatttgattgaacagtctatcgaaacgccggaacgacagaatgtggagctacgtaaatta
cagtccatgattgattactgtttctgtagtaattgcttgcgtaaatatatgcttaattac
tttggtgaaagcaccatttggacaacctgtgataattgtagctcttgtaagggctctgct
gataaggtcaatgttacgaaagaagcaaaggctattttccgtgccatcatgggcaccgat
gagcgatatggggcatcaatgataacctctattgttcgcggggagcgaacggatcgtatt
acgcgtgcaggccatgatgctttacctgtttttggtttactgagcaatgtagatgaaaag
tcaattaaagggcttatccaacagtttgtagcatctggatacttacgtagctctacaggt
aaatatcctgtattatccttaacggctggtgcagaggaagtgttagccggtcgcaaagag
gtggaggaaattagacaacatgtatctgtgccttctcgcactagtaagtctgctggctca
gtggtgcgaggaaaatccagctctacatcgggcggtttatttgaacatttacgtcaacat
cgcaaacgcttggcagaaaaagcgggtcttagaccgtatcttatcttccctgatacagta
ctcatagatttggcaaatttacgacctacaacattaggtgagtttggcaatgttaaaggc
gtaggggaagcaaagttgaaaaaatatggacttacctttttacaggtcattgcagaatat
aagggatga
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