Veillonella parvula: Vpar_1502
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Entry
Vpar_1502 CDS
T01130
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
vpr
Veillonella parvula
Pathway
vpr03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
vpr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Vpar_1502
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vpr03021
]
Vpar_1502
03400 DNA repair and recombination proteins [BR:
vpr03400
]
Vpar_1502
Enzymes [BR:
vpr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Vpar_1502
Transcription machinery [BR:
vpr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Vpar_1502
DNA repair and recombination proteins [BR:
vpr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Vpar_1502
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
SHOCT
Motif
Other DBs
NCBI-ProteinID:
ACZ25178
LinkDB
All DBs
Position
complement(1705680..1709882)
Genome browser
AA seq
1400 aa
AA seq
DB search
MLDVNEFDSMRIGLASPEQILSWSHGEVKKPETINYRTLKPERDGLFCERIFGPTKDWEC
HCGKYKRIRHKGVVCDKCGVEVTRAKVRRERMGHIQLATPVSHIWYFKGIPSRMGLILDI
SPRSLERVLYFASYIVVDPAGTPLTKRQLLSEQEFREYEAQFNEDGYTIGGKSVVIETVA
QRNERLAIVREAQRKERYNAALRDDATIPEADKEYEELTREERYELGAAEEVLFACIDMG
AEAVKALLSELDLEALNAELREELNTASGQRKIRAVRRLEVVEAFRQSGNRPEWMIMDIV
PVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPDIIVRNEKRMLQEA
VDALIDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELK
MHQCGLPKEMALELFKPFVMKRLVERGQASNIKAAKRQVERIGPGVWESLEEVIKEHPVL
LNRAPTLHRLGIQAFEPILWEGRAIKLHPLVCTAFNADFDGDQMACHLPLSVEAQAEART
LMLSSHNILSTKDGKPVAVPSQDMILGTYYLTVVRENTRDKAKTFATYDEVMLAYESHII
GLQDILYIRLPDHGRVETTAGRLIFNNALFPELWQYEKREDGTYSLGKVMDKKTVGKLVD
QCFQLFGNEKTAELLDRIKSLGYSFARRAGMTVAIADIKVPEVKTSLLDTAEQEVEKVSR
MYRRGLITEEERYRKTIQLWTKATEDVTDAMMDNMACDKDGFNPVYMMAISGARGNKQQI
RQLAGMRGLMADPSGRIIDLPIKANFKEGLTVLDYFTSSHGARKGLADTALRTADSGYLT
RRLVDVSQDVIVREDDCDVVGIDLVRERARLATSPRQALELLKDKLIGRVLDKDVVNAET
GELVVPAETILDEQCLADIAEAGVTSIALRGAHLGSDSDINHTNLVQKIILGESDDSIRA
TLKETMVQNMLNKDTVQAIVDSEGVEIFPADTRLTEEGIEAILNSDVKEVQVRNNEIHGI
EVEAIVEGTGVIEPLKDRIVGRIAAEELVNKETGEVIVPLNGEITEALADEVVKHYETVK
IRSVLTCRSPYGVCRKCYGRDLGTGNQVQVGEAVGIIAAQSIGEPGTQLTMRTFHTGGVA
GDDITQGLPRVEELFEARKPKRNAIIAENEGTVRVVPNEGKKGTNTIFITGEDGIELDYL
IPYGSRIIVKDGDVVSLGARLTEGSINPHDIMRVMGTEATQRYLVYEVQKVYKSQGVEIN
DKHIEVIVRQMLHKVKIETAGDADMLPGDMVDVNTFDEENRRLTLNGRENATGKRTLLGI
TKAALATDSFLSAASFQETTRVLTDAAIKGKIDPLLGLKENVIIGKLIPAGTGMSRYRKI
EVVKNTPEIIDITEEVMSED
NT seq
4203 nt
NT seq
+upstream
nt +downstream
nt
gtgctagacgtaaatgaattcgattccatgcgaatcggtttagcctctccagagcagatt
ttatcctggtctcatggggaagttaagaaacctgaaacaattaactaccgtacgttgaag
ccagaacgtgatggtctattctgtgaacgcatttttggaccaacaaaggactgggaatgt
cactgcggcaaatataaacgcatccgccataaaggcgtagtctgcgacaaatgtggtgta
gaggttactcgtgcgaaagtacgtcgtgaacgtatgggccatattcaattggctactcct
gtatctcacatttggtacttcaaaggaatcccatcccgtatgggtcttatccttgacata
tcaccacgttctttggaacgcgtattatactttgcttcctacatcgtagtagatccagct
ggtacaccattgacaaaacgtcaattgttgtccgagcaagaattccgcgaatacgaagct
caatttaatgaagatggttatactatcggtggtaaatctgtcgtaatcgaaacagtggct
caacgtaatgaacgtttagctattgttcgtgaagcacaacgcaaagaacgctataatgcg
gctcttcgtgatgatgcaacaataccagaagctgataaggaatacgaagaattaactcgc
gaagaacgctatgagttaggcgctgctgaagaggttctcttcgcatgtatcgacatgggt
gctgaagcggtaaaagctctcttatcagaacttgatcttgaagcattgaatgccgaattg
cgcgaagagttgaacactgctagtggtcaacgtaaaatccgtgcagttcgtcgtttggaa
gtagtagaagcattccgtcaatctgggaaccgtccagaatggatgattatggacatcgtt
cctgtaatcccacctgaattgcgtcctatggtccaattagatggtggccgttttgctaca
tctgacctcaacgatttataccgtcgtgttatcaaccgtaacaaccgtttaaaacgttta
ctcgacttgggtgctcctgatatcatcgtgcgcaacgaaaaacgcatgcttcaagaagcg
gttgatgcattgattgataatggccgtcgcggtcgtcctgttacaggtcctggtaaccgc
ccattgaaatccttgtccgacatgcttaaaggtaaacaaggtcgtttccgtcaaaacttg
ctcggtaaacgtgttgactactccggtcgttccgtaatcgtagtaggtcctgaacttaaa
atgcaccaatgtggtttaccaaaagaaatggcattggaattgttcaaaccgttcgttatg
aaacgcttggtagaacgtggtcaagcatccaatattaaggccgctaaacgccaagtcgaa
agaatcggccctggcgtatgggaatccttagaagaggtaataaaagaacatccagttctc
ttgaaccgtgcccctacattgcatagacttggtattcaagccttcgaaccaatcctttgg
gaaggtcgtgctatcaaattgcatccattagtatgtacagccttcaatgccgactttgac
ggtgaccaaatggcgtgtcacttaccattgtccgtagaagcacaagcggaagctcgtaca
ttgatgctttctagccataatattttgtccactaaggatggtaagccagtagcagtacct
tctcaagatatgatcttaggtacatactacctaacagttgtacgcgaaaatactcgtgat
aaagcaaaaacatttgctacctatgatgaagttatgcttgcctatgagtctcatatcatt
ggtttgcaagatattctttatatccgtttacctgatcatggccgtgtagaaacaacagca
ggtcgcttgatcttcaacaatgctttattcccagaattgtggcaatacgagaaacgtgaa
gatggcacttactctttaggtaaggttatggataagaaaacagttggtaaattggttgat
caatgtttccaattgtttggtaatgaaaaaacagcagaacttttggaccgcatcaagtcc
ttgggttactccttcgcacgtcgcgcaggtatgactgtagccattgctgatattaaagta
ccagaagttaaaactagtttgttagatacagcggaacaagaggtagaaaaagtatctcgt
atgtaccgtcgtggccttatcacagaagaagaacgttaccgtaaaactatccaattatgg
acaaaagcaacggaagatgttactgatgcgatgatggataacatggcgtgtgacaaagat
ggcttcaaccctgtttacatgatggctatctctggtgcccgtggtaataaacaacagatt
cgtcagcttgctggtatgcgtggtttgatggccgatccatctggtcgtatcatcgactta
ccaatcaaagcaaactttaaagaaggtttgactgtattggattactttacatcctctcat
ggtgctcgtaaagggttagccgatacagcgcttcgtacagctgactccggttacttgaca
cgtcgtcttgttgacgtatctcaagacgtaatcgttcgtgaggacgattgtgacgttgta
ggtatcgatctcgttcgtgaacgtgctcgtttggctacatctccacgtcaagcattagaa
ttgcttaaagataaactcattggtcgcgttttagataaagatgttgtgaatgctgaaaca
ggggaacttgttgtaccagctgaaactatcttggatgaacaatgcttggcagatattgct
gaagctggtgttacatctatcgcattgcgcggtgcacatttgggctctgatagcgatatt
aaccatactaacttggttcaaaaaattattcttggtgaaagcgacgatagcatccgtgca
acattgaaagaaactatggttcaaaatatgttgaacaaggatactgtacaagcaatcgtt
gacagcgaaggggtagaaatcttcccagctgatacacgtctcactgaagaaggtatcgaa
gctatccttaactccgatgtaaaagaagtacaagtacggaacaatgaaatccacggtatt
gaagtggaagctatcgttgaaggtactggtgttatcgagccattaaaagaccgtatcgta
ggtcgtattgcagctgaagaattagttaacaaggaaactggtgaagttatcgttcctctt
aacggtgaaatcacagaggcgttagctgatgaagttgtcaaacactatgaaacagtaaaa
attcgttccgtattgacttgccgtagcccatatggtgtatgtcgcaagtgttatggtcgc
gatttaggaactggcaaccaagttcaagttggtgaagctgtaggtatcattgcggcacaa
tccatcggtgaacctggtactcagttgacaatgcgtacgttccatactggtggtgtcgca
ggtgacgatattacacaaggtttgccacgtgtcgaagaattgttcgaagctcgtaaacca
aaacgtaatgccatcatcgcggaaaacgaaggtacagttcgcgttgtgcctaacgaaggt
aagaaaggtacaaacactatctttatcactggtgaagatggtatcgaactcgattacctc
attccttatggttctcgcattatcgttaaagacggtgatgtggtatccttgggtgctcgt
ttgacagagggttctatcaatcctcatgacatcatgcgtgtaatgggtactgaagcaact
caacgttacctcgtatacgaagtacaaaaagtatacaaatcccaaggtgtagaaattaac
gataaacatatcgaagttatcgttcgtcaaatgcttcacaaagttaaaattgaaacagct
ggcgatgcggatatgcttccaggggatatggttgacgttaatacctttgacgaagaaaac
cgtcgtctcaccctcaatggtcgtgaaaatgctacaggcaaacgcacgttattgggtatt
acgaaagccgctttggcaacggattccttcttgtccgctgcgtccttccaagaaacaaca
cgtgttcttaccgacgctgctatcaagggtaaaatcgatccattattgggtttgaaagaa
aacgtaattattggtaagttgattcctgctggtacaggcatgagtcgttaccgcaagatt
gaagttgtaaaaaatacacctgaaatcattgatattacggaagaggttatgtctgaagat
taa
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