Vespula pensylvanica (western yellowjacket): 122626880
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Entry
122626880 CDS
T07720
Name
(RefSeq) putative pre-mRNA-splicing factor ATP-dependent RNA helicase PRP1 isoform X1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
vps
Vespula pensylvanica (western yellowjacket)
Pathway
vps03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vps00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122626880
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
vps03041
]
122626880
03009 Ribosome biogenesis [BR:
vps03009
]
122626880
Enzymes [BR:
vps01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
122626880
Spliceosome [BR:
vps03041
]
Complex A
U2 snRNP components
U2 related factors
122626880
Complex B
122626880
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
122626880
Ribosome biogenesis [BR:
vps03009
]
Eukaryotic type
90S particles
Helicases
122626880
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
WHD_HA2
Helicase_C
DEAD
AAA_19
AAA_22
nSTAND3
SRP54
Cas3-like_C_2
AAA_25
AAA_7
T2SSE
Motif
Other DBs
NCBI-GeneID:
122626880
NCBI-ProteinID:
XP_043663332
LinkDB
All DBs
Position
2:8349619..8354156
Genome browser
AA seq
717 aa
AA seq
DB search
MSKRRIDVVDPYIKRRTIGSTSNNVPAAPTDTKNQVQINPYNGLPYTPRYHEFYKKRITL
PVFEYRVDFMRLLANHQCIVLVGETGSGKTTQIPQWCVEYSRCIGSKGVACTSPRRVAAM
SVAQRVSEEMDVCLGQEVGYSIRFEDCSSPKTMLKYMTDGMLLREGMSDPMLEAYQVILL
DEAHERTLATDLLMGVLKEVIKQRPDLKLVIMSATLDAGKFQQYFDNAPLMNVPGRTHPV
EIFYTPEPERDYLEAAIRTVIQIHVCEEVSGDLLLFLTGQEEIEEACKRIKREMDNLGPE
VGELKCIPLYSTLPPNLQQRIFEPAPPNKPNGAIGRKVVVSTNIAETSLTIDGVVFVIDP
GFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEKAYKNEMQDNTY
PEILRSNLGSVVLQLKKLGIDDLVHFDFMDPPAPETLMRALELLNYLAALDDDGNLTDLG
AVMAEFPLDPQLAKMLIASCNHNCSNEILSITAMLSVPQCFVRPNESKKAADDAKMRFAH
IDGDHLTLLNVYHAFKQNLEDPQWCYDNFVNYRSLKSGDNVRQQLSRIMDRFALKRTSTD
FTSKDYYINIRKALVNGFFMQVAHLERTGHYLTIKDNQIVQLHPSTCLDHKPEWVIYNEF
VLTTKNYIRTVTDIKPDWLLKIAPQYYDLQNFPQCEAKRQLEVIQAKLDSKQYQEGF
NT seq
2154 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaaacgtaggattgatgttgttgatccctatatcaaacgaagaacaattggatca
acatctaataatgtgcctgcagctcctactgacacaaaaaatcaagttcaaattaaccca
tataatggacttccttatacaccacgctaccatgaattttataaaaagaggataacacta
cctgtgttcgaatatcgtgttgatttcatgaggcttttagcaaatcatcagtgcatagtg
cttgtaggagaaacaggatcaggaaaaactacacagataccacagtggtgtgtagagtat
tcaagatgtataggaagcaagggtgtagcgtgtacttcaccaagaagagtagcagcaatg
tctgttgcacaaagagtttcggaagaaatggatgtttgtttaggtcaagaagttggatat
agtattcgttttgaagactgtagttctccgaaaactatgttgaagtatatgacagatggt
atgcttctacgtgaaggcatgtctgatcctatgcttgaagcatatcaagtaattttactt
gatgaagctcatgaaagaactttagctaccgatttacttatgggtgttttaaaagaagtg
ataaagcaaagaccagacttaaagcttgtaattatgagtgcaactttagatgctggaaaa
tttcaacagtattttgataatgcgccactcatgaatgtacctggtagaacacatccagtt
gaaattttttatacgccagaaccagaaagagattatttagaagctgctattagaacagtt
attcaaatacatgtgtgtgaagaagtgagtggagatctacttttatttttaactggtcaa
gaagaaattgaagaagcttgtaaaagaatcaaaagagaaatggataatttaggtcccgaa
gttggtgaactcaagtgtattccactatattcaacattacctccaaatcttcaacaaaga
atttttgaacctgctcctccaaacaaaccgaatggtgctattggtcgaaaagttgtagta
tcaactaacatagcagaaacatcattaacaatagatggtgtagtctttgtgattgatcct
ggttttgccaaacaaaaggtttataatcccagaattcgtgtagagtcacttcttgtatca
ccgattagtaaagcttctgcacaacaacgtgctggccgtgcaggtcgtactcgtccaggc
aaatgttttaggctatatacagaaaaggcatataaaaatgagatgcaagataatacttat
ccagagattctgcgatcaaatcttggtagcgttgtgttgcaattaaagaagttggggatc
gatgatctggtacattttgattttatggacccacctgcacctgaaactttaatgagagca
ctggagcttcttaattatttagcagctcttgatgatgatgggaatttaacagatcttgga
gctgtaatggcagaatttcctttggatccacaattagccaaaatgttaattgcttcttgc
aatcacaattgtagtaatgagatacttagcattactgctatgctttcagtcccacagtgt
tttgtgaggccaaatgaatcgaagaaggcagcagatgatgcaaaaatgagatttgcacac
atcgatggtgatcatttaacattactcaatgtttaccatgctttcaaacaaaatttggaa
gatccacaatggtgttacgacaattttgtcaattaccgatctttaaaaagtggagataat
gtcagacaacaattaagtagaataatggataggtttgctttgaaacgcacttctactgac
ttcacgtcaaaagattattatataaatataaggaaagctcttgtgaatggtttcttcatg
caggtggctcatttagaaagaacaggccattacttaacaattaaggataatcaaattgta
caattacacccaagcacttgtttggaccacaaaccagaatgggtgatttataatgaattt
gtactcacaaccaaaaattatattagaacagttactgatattaaacctgactggttacta
aagatagcaccacaatattatgatctacaaaactttcctcaatgtgaagcaaagaggcaa
ttagaagttattcaagccaaattggattcgaaacagtaccaggaaggattctaa
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