Vespula pensylvanica (western yellowjacket): 122627289
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Entry
122627289 CDS
T07720
Name
(RefSeq) ATP-dependent RNA helicase DDX42
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
vps
Vespula pensylvanica (western yellowjacket)
Pathway
vps03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vps00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122627289
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
vps03041
]
122627289
Enzymes [BR:
vps01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
122627289
Spliceosome [BR:
vps03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
122627289
Complex B
122627289
Complex C
U2 SnRNP specific factors
122627289
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
MscL
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
122627289
NCBI-ProteinID:
XP_043664282
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All DBs
Position
1:complement(14400953..14404699)
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AA seq
776 aa
AA seq
DB search
MSYHRGGGNKPKGFGFPGFQMTGTKRSGSNIPPPPPNSVLSKQGYHTMNSITENALSACW
GMPKKRSKTEEEYFEDDDDPPTSSLEYIPAPGSPTYDLMKKTTPKEDSDSEEDPLDAFMA
GIDAEVKKNNYEAQLAEEDRKEDKSKGFRADIDGEDDEESYYRYMEENPTAGLQQEESDQ
EIEYDEDGNPIAPPKKKEIDPLPAVDHSEIEYESFEKNFYNVHEEIANLSKQQIDDLRKT
LGIKVSGPSPPNPVTSFGHFGFDDALIKAIRKNEYTQPTPIQAQAVPAALSGRDIIGIAK
TGSGKTAAFIWPMLVHIMDQRELKTGDGPIGLILAPTRELSQQIYQEAKKFGKVYNIQVC
CCYGGGSKWEQSKALEAGAEIVVATPGRMIDLVKMKATNLTRVTFLVLDEADRMFDMGFE
PQVRSICNHVRPDRQTLLFSATFKKKVEKLARDVLTDPVRIVQGDVGEANTDVTQHVIMF
HNNPSGKWSWLLHNLVEFLSAGSLLIFVTKKLNAEELANNLKLKEFDVLLLHGDMDQIER
NKVITAFKKKDVSTLVATDVAARGLDIPHIKTVVNYDVARDIDTHTHRIGRTGRAGEKGT
AYTLVTEKDKEFAGHLVRNLEGANQEVPKSLMDLAMQSAWFRKSRFKGGKGKSLNVGGAG
LGFRERPDTSTNTTSGTSQGSKDISEVVKKLERHGPGSDRLSAMKAAFRSQYNSQFRASS
DHTWEQTITPPSVIMPPPPPVPPKPSVDRPKDNQTSNSSESDNKTERKRVRKSRWE
NT seq
2331 nt
NT seq
+upstream
nt +downstream
nt
atgagttatcaccgtggtggtggtaataaacctaagggttttggattccctggttttcaa
atgacaggaaccaaacgaagtggttccaatatacctcctcctccaccaaattcagtactg
agtaaacaaggatatcacactatgaactctattactgaaaatgctttatctgcttgttgg
ggtatgccaaagaaacgtagcaaaactgaagaagaatattttgaagacgatgatgatcct
cctacatcctccttggagtatatacctgcacctggatcgccaacatacgacttaatgaaa
aagacaacaccaaaagaagatagcgatagcgaagaagatcctttagatgcttttatggca
ggtattgatgcagaagttaagaaaaataattatgaagctcagttagcagaagaagatcgt
aaagaagacaagtctaaaggatttagagcagatatagatggggaggacgatgaagagagc
tattataggtatatggaagaaaatcctactgctggattacaacaagaagagtctgatcag
gagatcgaatatgatgaagatggaaatcctatagcacctcccaaaaaaaaagagattgat
ccattaccagcggttgatcatagtgaaatagaatatgagtcttttgaaaaaaatttttat
aatgtacatgaagaaattgcaaatttaagtaagcaacaaattgatgatttaagaaagact
ttgggtataaaagtatcgggaccttcgccaccgaatcctgtcactagtttcggacatttt
ggatttgacgatgctctgataaaagccattcgaaagaatgagtatacacaacccacacca
attcaagctcaagctgtccctgctgctttaagtggacgagatattataggtattgcaaaa
actggtagtggaaagacagcagctttcatatggccaatgttagttcatatcatggaccag
agagaattaaaaactggagatggtcctattggtcttattttggcaccaactagagaatta
tctcaacagatttatcaagaagcaaagaagtttggtaaagtgtataacatacaagtctgt
tgttgttacgggggtggtagtaaatgggaacaaagtaaagctttagaagctggtgctgaa
atagttgttgccacacctggtagaatgatcgacttggtcaaaatgaaagcaacaaattta
acaagggtcacatttttggtattggatgaagcggatcgaatgtttgatatgggatttgag
cctcaagtgcgatcgatatgtaatcatgttagaccagacagacaaacgctactttttagc
gccacatttaagaagaaagtcgaaaaacttgctagagacgttttaacagatccagtaagg
atagttcagggagatgttggagaagccaatacagatgtaactcaacatgtcataatgttt
cataataatccttctggtaaatggtcttggttattacataatcttgtagagtttttaagt
gctggaagtttattaatctttgtgaccaaaaagttgaatgcagaggagcttgccaataat
cttaagttaaaagaatttgatgttttacttttgcatggtgatatggaccaaattgaaaga
aataaagttattacagcgtttaaaaaaaaggatgtcagcaccttagtagctactgatgta
gctgctcgtggtttggacattccacatataaagacagtcgtgaattatgacgtagcacgt
gatattgatacgcatactcatagaataggtagaacaggtcgagcaggagaaaagggtact
gcatatactcttgtgacggaaaaagataaagaatttgccggtcatttagtaaggaatctt
gaaggtgcaaatcaggaagttcctaaaagcttaatggatttggccatgcaaagtgcttgg
ttcagaaagtccagatttaaaggtggaaaaggtaaaagtttgaatgttggtggtgctgga
cttggtttcagagaaagacctgatacttcaacgaatacgaccagcggcacttcgcaagga
tccaaagatataagtgaagttgttaaaaaattagaaagacacggtccaggcagtgatcgt
ctttctgctatgaaagctgctttccgaagccaatataattcacaattccgagcgtcgtcg
gatcatacgtgggaacaaactatcacaccaccttcggttataatgccgccaccaccgcca
gtgcccccaaaacctagtgtagatcgacctaaagacaaccaaacctcgaattcttctgaa
tcagacaacaaaacggaacggaaaagagtacggaagagtcgttgggaatga
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