Vespula pensylvanica (western yellowjacket): 122628295
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Entry
122628295 CDS
T07720
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
vps
Vespula pensylvanica (western yellowjacket)
Pathway
vps03020
RNA polymerase
vps03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
vps00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
122628295
09124 Replication and repair
03420 Nucleotide excision repair
122628295
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vps03021
]
122628295
03400 DNA repair and recombination proteins [BR:
vps03400
]
122628295
Enzymes [BR:
vps01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
122628295
Transcription machinery [BR:
vps03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
122628295
DNA repair and recombination proteins [BR:
vps03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
122628295
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
DUF3137
Motif
Other DBs
NCBI-GeneID:
122628295
NCBI-ProteinID:
XP_043666383
LinkDB
All DBs
Position
4:complement(6836730..6843707)
Genome browser
AA seq
1904 aa
AA seq
DB search
MATSDSKAPLRTVKRVQFGILSPDEIRRMSVTDGGIRFPETMEGGRPKLGGLMDPRQGVI
DRNSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFITKTIKILRCVCFYCSKLLVSPHNPK
IKEIVMKTKGQPRKRLTFVYDLCKSKNICEGGDEMDINKENSEQQPTDRKPGHGGCGRYQ
PNLRRSGLDVTAEWKHVNEDSQEKKIVLTAERAWEILKHITDEESFILGMDPKFARPDWM
VVTVLPVPPLSVRPAVIMYGSAKNQDDLTHKLADIIKSNNELLRNEQAGAAAHVISENIK
MLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVIT
PDPNLRIDQVGVPRSIAQNLTFPEIVTPFNIDKMQELVRRGNSQYPGAKYIVRDNGERID
LRFHPKPSDLHLQCGYRVERHIRDGDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSC
TSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQANKPVMGIVQDTLTAVRKM
TKRDVFIEKEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHST
HPDEEDDGPYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRF
YGNIQTVINNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPT
PGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACV
GQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLI
DTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLCGETVEFQNLPT
IKLSNKAFEKKFKFDPTNERYLRRIFNEDIVREMMGSGEVISELEREWEQLNRDRAVLRE
IFPSGESKVVLPCNLQRMIWNVQKIFHINKRAPTDLSPMRVIQGVKDLLEKCIIVAGDDR
LSKQANENATLLFQCLVRSTLCTKCVSEEFRLSSEAFEWLIGEIETRFQQAQVSPGEMVG
ALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGAAA
RDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVIAEDQEFVNVYYEMPDFDPTKIS
PWLLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDNK
FQDTEEETVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIVITETGE
FKAIAEWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNAVLQ
FYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLLDAASHAE
VDPMRGVSENIIMGQLPRIGTGCFDLLLDAEKCKAGIEIPMAVGAGVMGTAGMFFGSVAT
PSMSPQMTPWMGATPGYGASSMSPALGSGMTPGGACFSPSGASDASGLSPAYSAYSPQPG
SPGSPGPSMSPYPMSPAGGASPSYSPTSPAYLPTSPSMTPSSPNYSPTSPTYSPTSPNYS
PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP
SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPNYTP
ASPSYSPTSPSYSPSSPQYSPASPSYSPSSPKYSPTSPSYSPTSPSFAGTSPQYTPASPT
YSPTSPTYSPTSPSYSPSSPQHTATGSTRYSPSSPNYSPTSPTYSPTSPQYSPSSTKYSP
TSPTYTPTSPSYSPTSPTYSPPVPGYSPTSPTYSPASPAYETDD
NT seq
5715 nt
NT seq
+upstream
nt +downstream
nt
atggccacgtccgattctaaagcacctttaagaactgtaaaaagagtgcaatttggcatt
ctttctccagatgaaatacgtcgtatgtcagttacagatggaggcatacgctttccagaa
actatggaaggaggtagaccaaaactcggtggcctcatggatccaagacaaggggtgatt
gatagaaattctcgatgtcagacatgtgctggtaatatgacagagtgtccaggtcatttt
ggacatatagatttggccaaacctgtttttcatgttggatttattactaaaacaataaaa
attctcagatgtgtatgtttttattgttcaaaactacttgtcagtccacacaatccaaaa
attaaagagatagttatgaaaacaaaaggtcaaccacgtaaacgtcttacatttgtatat
gatttatgcaaaagtaaaaatatctgtgaaggaggagatgaaatggatatcaataaagaa
aattctgaacaacaacctacagatagaaaaccaggtcatggtggttgtggtagataccag
ccaaatttaagaagatctggattagatgttactgcagaatggaaacatgtaaatgaagat
tcccaagagaaaaaaatagttctgactgctgagagagcatgggaaattttgaaacatatc
actgatgaagaatcatttattcttggtatggatcctaaatttgcaagaccggattggatg
gtagttacagttttaccagttccacctttgtcagtaagaccagcagttattatgtatggt
tcagctaaaaatcaggatgatttgacacataaattagcagatataatcaaatcaaataat
gaattattaagaaatgaacaggctggtgcagcagctcatgttatatcagaaaatattaag
atgttacaatttcatgtagcaacattagtagataatgatatgcctggtatgccaagagca
atgcaaaaatctggaaaaccattgaaagctataaaagcaagactaaaagggaaagaagga
agaatacgaggcaacttaatgggcaagcgtgtagatttttcagcacgtaccgtcattacg
cctgatccaaatttaagaattgatcaagtaggcgttcctcgcagcattgctcaaaattta
acatttccagaaattgtaacacctttcaatattgacaagatgcaggagttagtaagacgt
ggtaattcacagtatcctggtgccaagtatatagtcagagataatggagaacgtatagat
ttaagatttcatccaaaaccttctgatctccatttacagtgtggatatagggtagaaagg
catatcagagatggagacttggttatttttaatcgacaaccaactcttcacaaaatgagt
atgatgggtcacagagttaaagttctcccatggagtacttttcgtatgaatttaagctgt
acatcaccttataatgccgatttcgacggagacgagatgaatcttcatgttccacaatca
atggagactcgagcagaagtagaaaatatacatgttactcctcgtcaaattattactcct
caagcaaataaaccagttatgggtattgtacaagatactttaactgctgtgaggaaaatg
acaaaaagagacgtttttatagaaaaagaacaaatgatgaatattcttatgtttttacct
agttgggatggcaaaatgcctcaaccatgtatattgaaaccaaaacctctctggactggg
aaacaaattttttcattaatcattccaggaaatgtaaatatgataagaacacacagtaca
catccagatgaggaagatgatggaccatataaatggatatcacctggtgatacgaaagtt
atggtggaacatggggaattagttatgggtattctttgtaagaagaccttaggtacatcg
gcaggatccttacttcatatttgtatgctggaattaggccatgaagtatgtggacgtttt
tatggaaatattcagactgtgatcaacaactggctattgttggaaggtcattcaattggt
attggtgatactattgctgatccacaaacatatttagaaatccagaaagctattaaaaaa
gccaaagaagacgtgatagaagttatccaaaaagctcataatatggaattagagcctaca
cctggtaacaccttaaggcagacatttgaaaatcaagtaaacagaattttgaatgacgct
cgtgataaaactggtggctctgctaaaaaatctttgactgaatataacaatttaaaagct
atggtcgtatcaggttcaaaaggatccaatattaatatttctcaagttattgcttgtgta
ggacaacaaaacgttgaaggtaaaagaatacctttcggttttcgtaaaagaactttgccg
cattttatcaaggatgattatggtcctgagtctagaggatttgttgagaattcttactta
gccggtcttacaccatccgagttttatttccatgctatgggtggtcgtgaaggtcttatt
gataccgctgtcaaaactgccgaaacaggatatattcagcgtcgtttgatcaaagctatg
gagtctgtaatggttcattatgatggaactgtaagaaattctgttgggcaacttattcaa
ttacgttatggtgaggatgggttatgtggtgaaactgttgagtttcaaaatttacctact
attaaactcagcaataaagcatttgaaaagaagtttaaatttgatccaaccaatgaacgg
tatctgagacgcatttttaatgaagatattgtccgtgaaatgatgggatcgggtgaagta
atttccgaattagaaagagaatgggaacaacttaatagagatagagctgttcttcgtgaa
atttttcctagtggagaatccaaagttgtactcccatgtaatttacaaagaatgatttgg
aatgtccaaaaaattttccacatcaacaaaagagctcctactgatctcagtcctatgaga
gttatacaaggcgtaaaagatcttttagagaaatgtataattgtagctggggatgataga
ttaagtaaacaagctaacgaaaatgctacattgttatttcaatgtttagtgagatcaact
ctatgtacaaaatgtgtatctgaagaattcagactttccagtgaagcttttgaatggctt
attggagaaattgaaactagattccaacaagcacaagtgtcaccaggtgagatggtaggt
gcattagctgcacaatctcttggtgaacctgcaacacagatgacactcaatactttccac
tttgccggtgtctcatcaaagaacgtaactcttggtgtacctagattgaaagaaattatt
aacattagtaaaaagccaaaagcaccttcactgacagtatttttaactggtgctgctgcc
agggatgcagaaaaagcgaaaaacgttctctgtcgtcttgaacatactacattacgaaaa
gttactgccaataccgcgatctattatgatcctgaccctcaaaatactgttattgctgaa
gatcaagagtttgtcaatgtatactacgaaatgccggacttcgatccaacaaaaatatca
ccttggttattacgtattgaattggacagaaaaaggatgacagataaaaaattgactatg
gaacagattgcagaaaaaattaatgcaggttttggagatgatttgaattgtatattcaat
gatgataatgcagaaaaattggtcttacgaattagaattatgaatagtgatgataataaa
tttcaagacacagaagaagaaactgtggataaaatggaggatgatatgttccttcgatgt
atcgaagctaatatgcttagtgacatgactttacaaggtatcgaagctattggtaaagta
tacatgcatttaccgcaaactgattcgaaaaagcgaattgttataacggagacaggtgaa
tttaaagcgatagcagaatggttacttgaaactgacggaacaagtttaatgaaagtatta
agtgaaagagacgttgatccagttcgaacattcagtaatgacatttgcgaaatattccaa
gtattgggtatcgaagctgtacgaaagtctgttgaaaaagaaatgaatgctgtattacaa
ttctatggtctttacgtaaattatcgacatctcgctttactttgtgacgttatgactgct
aaaggtcatttaatggctataactcgtcatggaatcaacagacaggacaccggagcatta
atgagatgttccttcgaagaaacggtcgacgttctattggatgctgcttcgcatgctgaa
gtcgatccaatgagaggagtgtcagaaaatattattatgggtcaactgccgcgtatagga
actggttgtttcgatctattactcgatgcagagaagtgtaaagctggaattgaaatacca
atggcagtaggtgctggtgtaatgggaactgccggtatgttctttggtagtgttgcgact
ccgagcatgagtcctcagatgacaccatggatgggagctactcctggttatggtgcatcg
agtatgtcgcctgctctaggcagcggcatgacaccaggaggtgcttgtttctcaccatcg
ggagcgtctgatgcttcgggattgtctccagcatattccgcttactctccacaaccagga
agtcctggaagtccaggacctagtatgagtccttatccaatgtcaccagccggtggtgct
tcgccaagttactcgcccacatcaccagcttatttgccaacatcacctagtatgacacca
tcgagtccgaattattcgccgaccagtccaacatattcgccaactagtccaaactattca
ccaacgtcaccaagttattcacctaccagtccaagttattcaccaacaagtccaagttac
tcgccgacttcgccgagctattcaccaacctcaccaagttattcacctaccagtccaagt
tattcaccaacaagtccaagttactcgccgacttcaccaagctattcaccgacaagtcca
agttattcgccaacaagtccaagttattctccaacaagcccaagttactctccgacgagt
ccaagttattccccaacaagtccgagttattcgccaacaagtccaagctattcgccaaca
agtccgagttattcaccaaccagtccaagttattcgcctagttcacctaattatacacca
gcctcaccgtcttattcacctacaagtccgagctattcacccagctcgcctcaatattca
ccggctagtccaagttattctcctagcagcccaaaatattcaccaacaagtccgagttac
tcgcccacttcaccttcctttgctggaacatcgccacaatatactccagcgagtccaaca
tattctcctacaagtccaacttattcgccgacaagtccatcgtattctccaagctcacca
cagcacacagctactggtagtacaagatattcgcctagcagtccgaattattcgccaacg
agtcctacatattcaccaacgagtcctcagtattcaccttcgagtacgaaatattcgcct
acaagtcctacttacactccaacgagtcctagttattcgccaacaagtccaacatattca
cctccggtacctggttactctcctacgagtccaacctattcaccggcctcgcctgcttat
gagacggacgattaa
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integrated database retrieval system
