Vespula pensylvanica (western yellowjacket): 122629054
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Entry
122629054 CDS
T07720
Name
(RefSeq) putative U5 small nuclear ribonucleoprotein 200 kDa helicase isoform X1
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
vps
Vespula pensylvanica (western yellowjacket)
Pathway
vps03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vps00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122629054
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
vps03041
]
122629054
Enzymes [BR:
vps01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
122629054
Spliceosome [BR:
vps03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
122629054
Complex C
U5 SnRNP specific factors
122629054
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
WHD_SNRNP200
DEAD
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_22
AAA_30
AAA_16
nSTAND3
AAA_25
PhoH
Motif
Other DBs
NCBI-GeneID:
122629054
NCBI-ProteinID:
XP_043667975
LinkDB
All DBs
Position
5:7966588..7974702
Genome browser
AA seq
2134 aa
AA seq
DB search
MADAAARQLQYEYKANSNLVLQADVRLIERRSRDEATGEVMSLVGKLDGTRMGDRAQRTK
PGKAEERKAKRQKRDEAQYDFARMRGATLLSEGVDEMVGIVYRPKTQETRQTYEVLLSFI
QEALGDQPRDILCGAADEVLAVLKNDRLKEREKKKETELLLGSLAEERFALLVNLGKKIT
DFGNDEKSTTNEENIDETYGINVQFEESSEEDDEDVYGEVRENDDEGDEGEEADDDRAIH
AENLGGAEEMKKEKPLHPLDIDAYWLQRRLSRIYDDAMVSQARAAEVLTVLKDASDDRDC
ENQLVLLLGYDCFDFIKQLKKYRQTIAYCTMLAASQSESERQKIRNKMNDDPVLAKILKQ
LDTGKGDDDADETMEARAQRKRREENEDTGGPGGQVQGTRNLIDLEDLIFAQGSHFMANK
RCQLPDGSFRKQRKGYEEVHVPALKPKPFGENEKLLPIEDLPKYVQPAFEGFKTLNRIQS
RLYQTALESDENLLLCAPTGAGKTNVALLCMMREIGKHINADSTINADEFKIIYVAPMRS
LVQEMVGNFGKRLATYNLTVSELTGDHQLTREQIAATQVIVCTPEKWDIITRKGGEKTFT
SLVRLIIIDEIHLLHDERGPVLEALVARTIRNIETTQEDVRLVGLSATLPNYQDVATFLR
IKMETGLFYFDNSFRPVALEQQYIGVTEKKALKRFQVMNEIVYEKTMEHAGRNQVLIFVH
SRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLRSEAEQVKNQELKDLLPYGFAIHH
AGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQVYNPEKGRWVELGA
LDVLQMLGRAGRPQYDTKGEGILITNHSELQYYLSLLNQQLPIESQLISKLPDMLNAEIV
LGTIQNIRDAVTWLGYTYLYVRMPRCPNLYGISHDKLREDPLLELHRADLIHSAAVALDR
SGLIKYDRKSGNFQATELGRIASHYYCTHETMSTYNQLLKRTLSEIELFRVFSLSSEFKN
INVREEEKLELQKLMERVPIPVKESIEEPSAKVNVLLQAYISQLKLEGFALMSDMMLVTQ
SATRLMRAIFEIVLFRGWAQLADKCLSLCKMIDRRMWQSMSLLRQFRKMPEEIVKKIEKK
NMQWERWYDLGPNETGEMIRSPKLGRTIHKYVHQFPKLELSTHIQPITRSTLRVELTITP
DFQWDEKVHGASEAFWILVEDVDSEVILHHEYFLLKAKYATDEHLIKFFVPVFEPLPPQY
FLRVVSDRWIGAETQLPVSFRHLILPEKNLPPTELLDLQPLPITALRNAKFENLYANKFP
QFNPIQTQVFNAVYNSDDNVFVGAPTGSGKTTIAEFAVLRLLTQNPEGRCVYMVSKEALA
ELVYADWLVKFGQQLNRKVVLLTGETGTDLKLLAKGQIVITTADKWDVLSRRWKQRKNVQ
NIQLFIVDELQLIGGEEGPVLEVACSRARYISSQLDKPTRIVALSASLADAKDAAQWLGA
PAAATFNFHPSVRPVPLELHVQGINITHNASRLAAMAKPVYNAILRHAAHKPVIVFVPTR
RQARLTAIDLLTFTAAEGAPSRFFHAEEADIKPFLDRMTDKTLKETLSQGIAYLHEGLSA
DDRRLVEQLFDSDAIQVAVATRDLCWSLSISSHLVVVMDTQCYNGKTHAYEDYPITDVLQ
MVARANRPLEDDDAKCVLLCQSSKKDFFKKFLNEPLPVESHLDHRLHDHFNAEIVTKTIE
NKQDAVDYLTWTFLYRRLTQNPNYYGLQGVTHRHLSDHLSELVETTLNDLEQAKCVAVED
EMDTLPLNLGMIAAYYYINYATIELFSLSLNNKTKIRGLLEIISAAAEYETVPVRQREEN
LLRSLAVRLPHAPQATRMADPHVKAQLLLQAHLSRIQLGPELQKDTELVLSKAVRLIQAC
VDVLSSSGWLTPAVAAMELAQMVTQAMWSKDSYLKQLPHFTSETIKRCTEKSVETVFDVI
ELEFDDRNRLLQLTDAQMADVAKFCNRYPNIEMSYEVQDKDKLHSGGTVNVIVQLEREDE
VTGPVVAPFFPQKREEGWWVVIGDPKTNSLLSIKRLTLQQKAKVKLDFVAPAPGQHSYTL
YFMSDAYLGCDQEYKFTINVGEYESDASSGSESE
NT seq
6405 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgctgcagcgcggcagttgcagtacgaatataaagcaaattcaaatttagtt
ttacaagcagacgttcgactaatagaaaggcgtagcagagatgaagctacaggagaagtt
atgtcccttgttgggaagcttgatggtacacgcatgggagatagagctcaacgaaccaaa
ccaggaaaagctgaagaaagaaaagcaaaacgtcagaagcgagatgaagcacaatacgat
tttgcacgtatgagaggtgccactttgctttctgaaggagtagatgaaatggttggtatc
gtttatcgacccaaaactcaagaaacccgtcaaacttatgaagtattgctcagttttatt
caagaagctttaggtgatcaaccacgtgacattctatgtggtgctgcggatgaggttctg
gcagtattgaaaaatgacagattaaaagaaagagaaaagaagaaggaaacagaattgttg
cttggttcgttagctgaagaaagatttgcgttattggtgaatcttggaaagaaaataaca
gattttggaaacgatgaaaaaagtactacaaatgaagaaaatattgatgagacatatgga
attaacgtacaatttgaagagagcagcgaagaagatgatgaagatgtttatggagaggtt
agagagaatgatgatgaaggcgatgaaggagaagaagctgacgatgatagagctattcat
gctgagaacttaggtggagcagaagaaatgaaaaaggaaaagccattgcatccacttgat
atagatgcatattggttacaaagaaggttaagtagaatatatgacgatgcaatggtttct
caagcaagagcagcagaagtactaacagttttgaaggatgctagcgatgatcgtgattgt
gaaaatcaattagttttacttttgggctacgactgttttgattttataaaacagttaaaa
aaatatagacagacaattgcttactgcacaatgttggcagcttcgcagtccgaatcagag
agacaaaaaatacgtaataagatgaatgatgatccagtacttgcaaagattttaaaacag
ttggatacaggcaaaggtgacgatgatgcagacgaaacaatggaagccagagcacagcgt
aagagaagagaagaaaatgaagacactggtggtccaggaggacaagttcaagggactaga
aatttaatagacttagaggatttaatatttgcacaaggaagtcattttatggcaaacaaa
cgttgtcaactacccgatggaagttttaggaaacaaagaaaagggtatgaagaagttcat
gtacctgctttgaaacctaaaccatttggggagaatgagaaacttctaccgatcgaagat
ttaccaaagtacgtccaacctgctttcgagggttttaagacattaaacagaattcaaagt
cgtttatatcagactgcgttggaaagcgacgaaaatttattactgtgtgctcccactggc
gctggaaaaacaaacgttgctctcctctgtatgatgcgtgaaatcggtaaacacattaac
gcagatagcacaataaacgcagatgagttcaaaataatttatgtagcaccaatgcgttct
cttgtacaagaaatggttggtaatttcggaaaacgattagcaacttataatttaactgtt
tcggaattaactggagatcatcagttaaccagagaacaaatagctgcaacgcaagtaatt
gtttgcacaccggaaaagtgggatattataacacgtaaaggtggtgagaagacattcact
tcgttagtaagattaattattatcgatgaaattcatttgttgcacgatgaaagaggaccg
gttttggaagcgttggttgcgagaacgatcagaaatatcgaaactactcaggaggatgtt
cggcttgtaggtctttcagctacattgccaaattatcaagacgttgccacgttcctacgt
ataaaaatggaaactggtcttttctattttgacaatagtttcaggcccgttgctttagaa
cagcaatatattggtgtgaccgaaaaaaaagcattgaagcgatttcaagttatgaatgaa
atagtttatgaaaaaacaatggaacatgctggtcggaatcaggtattaatcttcgtgcat
tctcgcaaggagaccggaaaaactgcacgtgcgatcagagatatgtgtttagaaaaagat
actttaggccaatttcttcgggaaggttcggcttctatggaagtgttaagaagcgaagcg
gagcaagtaaagaatcaagaactgaaggatttattgccgtatggatttgctatccatcat
gctggtatgactagagtagatcgtactttagttgaagatctttttgctgacagacacata
caagtccttgtttcaactgcaactttggcttggggtgttaatttgcctgctcatacggtc
atcatcaaaggtacacaagtgtataatccagaaaaaggcaggtgggtcgaactaggtgcc
ttggacgttctacaaatgttaggtcgagccggtcgtccacagtatgacactaaaggtgaa
ggaattttaattaccaaccacagtgaactgcaatactatttgtcccttctaaaccagcaa
ttgccaatcgaatcgcaattgatcagcaagctaccggatatgttaaacgcagagatagtt
ttaggcaccattcaaaacatcagagatgccgtcacctggctcggttacacgtatttatat
gtaagaatgccacgttgtcctaatctctatggaataagtcacgacaaattgagagaagat
cctttgttggaattacatcgagctgatctaatccattctgccgcagttgcattagaccga
agtgggttgattaaatacgatcgtaaatcgggaaatttccaagcaaccgagttaggtaga
atagcttctcattattattgcactcacgaaacaatgtcgacatataatcaacttctcaag
cgaacgttaagcgagatcgaattgttccgagtattctctttatccagcgaattcaaaaat
atcaacgtcagagaagaagagaaattggaattgcaaaaattaatggagagagtacctata
ccggttaaagaaagtatagaagagcctagtgctaaagtgaacgtattgttacaagcatac
atctcacaattaaaattagagggatttgctctgatgtccgatatgatgttagttacgcaa
tcggcaacgcgattgatgcgagccatattcgaaattgtactgttccgcggatgggcgcaa
ttagcggataaatgtttatccttgtgtaagatgatagatcgtagaatgtggcaatccatg
tcgctcttaagacaattccgaaagatgccggaggaaatagtaaagaaaatagagaagaaa
aacatgcagtgggaaaggtggtacgatctcggaccgaacgagaccggcgaaatgatacgt
tcacccaaattgggcagaactattcataaatacgtccatcaatttccaaaattggaattg
tcgacgcatattcagccgattacacgatctaccttgcgtgtcgaattaacgatcacgcct
gattttcaatgggacgagaaagtacacggtgcgtccgaagcattctggattctcgtggag
gacgtcgattccgaggtcatactccatcacgaatatttccttttgaaagcgaaatacgca
accgacgagcatttgatcaaattctttgttccagttttcgaacctttaccaccgcaatat
ttcttacgtgtagtatcagacagatggatcggggctgagactcaattacccgtcagtttt
agacatcttatattaccagaaaagaatttgccaccaacggaattactagatcttcagcct
ttaccgatcaccgcattgcgaaacgcaaagtttgaaaatttatacgccaacaaatttccg
caatttaatccgatacaaacacaagtattcaacgcggtatacaattccgatgacaacgta
tttgtcggggcaccaaccggatctggaaagactactattgccgagttcgcagtacttcgt
ttgctgacgcaaaatccagaaggtagatgcgtctacatggtcagcaaggaagctttggct
gaactggtttatgctgattggctagtaaagtttggtcaacaactgaacaggaaagtggtt
ttattgactggagaaactggaacggatctgaaattacttgccaaaggacaaatagtcata
acgaccgctgataaatgggacgtactttctcgaagatggaaacaacgaaaaaacgtacag
aatattcagctatttattgtggacgaattgcaattgatcggtggagaggaaggtcctgtt
ttggaagttgcttgttcccgagcgagatatatttcttcacagttggataaaccaactagg
atagtagctctgtcagcgtcattggccgatgctaaggatgcagcacaatggttgggtgca
ccagctgcggcaacttttaactttcatccttcggtcagacctgtaccattggaattacac
gttcaaggcattaatatcactcacaacgcctccagattagctgctatggccaaaccggtg
tacaacgcgatattgagacacgccgctcacaaacctgttatcgtctttgtaccaactcgt
cgacaggccagattaacagccatcgatctgttaacgtttacagcagcagagggtgcacca
tcgagattcttccatgccgaggaagctgatatcaaacccttcttggatagaatgacggat
aaaacgttgaaggagaccttgtctcaaggtatagcttatttgcacgaaggactttctgcg
gatgatcgacgtttagtcgagcaattgttcgacagtgatgctatccaagtagcagtagca
accagagatttgtgctggagtttatccattagttcccacttagtggtagtgatggacact
caatgttacaacggaaaaactcacgcatacgaggattatccgataacagacgtcttacaa
atggtagcacgagctaatcgacccctagaggacgacgatgccaagtgcgtgctcctttgt
caaagttctaagaaggatttcttcaaaaaattcttaaacgagccgctaccagtagagagc
cacttggatcacagattacacgatcactttaacgccgaaatcgttacaaagacgatagaa
aacaagcaagacgcagtcgattacttaacatggacattcctatacagaagacttactcaa
aatccaaattattacggattgcaaggggtcacgcacagacatttgtcggatcacctatcc
gaattagtcgaaactacattaaacgatctcgaacaagccaaatgtgttgcggtcgaggac
gaaatggatacattgccgttgaatcttggaatgatcgctgcttattattatatcaattat
gctaccatcgaattgtttagtttatctttgaacaataaaacgaagatccgtggtctcttg
gagattatatcagcagctgcggaatacgaaacagttccagttagacaacgagaagagaat
ctgctgagaagtttagcagtacgtcttcctcatgcacctcaagcaacaagaatggccgat
cctcacgtgaaagctcaattactcttgcaagctcatctctccaggatacaattaggtccg
gagttacaaaaagacacggaattagttttgagcaaagcggtcagattgatacaagcttgc
gtcgatgtccttagttcttcaggttggttgacacctgccgtcgcagctatggaattagca
cagatggtaacgcaagccatgtggtcgaaggattcttatctcaagcaattaccacacttt
acctccgaaacgatcaaacgatgcacagagaaaagcgttgaaactgttttcgacgtgata
gaattagagttcgatgatagaaacagacttttacagctgactgatgcacaaatggcggac
gttgccaaattctgtaatcgttatcccaacatcgaaatgtcttacgaggttcaggataag
gataagttgcatagtggcggtactgtgaacgttatcgttcagctcgaaagagaggacgaa
gtgactggtccagtagttgcaccattcttcccacaaaaacgcgaagaaggttggtgggtt
gtcatcggagaccccaaaaccaattctctactctccatcaagagactaactttacaacaa
aaagctaaagtaaagttagactttgttgctccggcaccaggacaacattcgtatacttta
tatttcatgagcgatgcgtatcttggatgcgatcaagagtacaaatttacaatcaacgtt
ggtgaatatgaatcggatgcaagttctggttctgaatccgaataa
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integrated database retrieval system
