Vespula pensylvanica (western yellowjacket): 122629617
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Entry
122629617 CDS
T07720
Name
(RefSeq) 5'-3' exoribonuclease 1 isoform X1
KO
K12618
5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
vps
Vespula pensylvanica (western yellowjacket)
Pathway
vps03008
Ribosome biogenesis in eukaryotes
vps03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vps00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
122629617
09123 Folding, sorting and degradation
03018 RNA degradation
122629617
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vps03019
]
122629617
03009 Ribosome biogenesis [BR:
vps03009
]
122629617
03016 Transfer RNA biogenesis [BR:
vps03016
]
122629617
03036 Chromosome and associated proteins [BR:
vps03036
]
122629617
Messenger RNA biogenesis [BR:
vps03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
122629617
mRNA degradation factors
5'-3' decay
5' exonucleases
122629617
Ribosome biogenesis [BR:
vps03009
]
Eukaryotic type
Pre-60S particles
RNases
122629617
Transfer RNA biogenesis [BR:
vps03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
122629617
Chromosome and associated proteins [BR:
vps03036
]
Eukaryotic type
Gene silencing
piRNA pathway
122629617
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_N
XRN_M
XRN1_D2_D3
XRN1_D1
SH3_12
DUF1912
Motif
Other DBs
NCBI-GeneID:
122629617
NCBI-ProteinID:
XP_043669185
LinkDB
All DBs
Position
5:5201217..5208992
Genome browser
AA seq
1594 aa
AA seq
DB search
MGIPKFFRYISERYPCLSEMLKNYQIPEFDNLYLDMNGIIHACSHPNDSDINFQITNDEI
YNNIFHYIEILFGMIQPQKLFFIAIDGVAPRAKINQQRARRFRTAKATELLEAAAKADGV
EVTPQLFDSNCITPGTVFMSEISKRLRYFITYKVSTDKLWQKCKILFSGPEVVGEGEHKI
MDYIRHLKSQVDYDPNIRHCLYGLDADLIMLGLCTHERNFSLLREEIKFGKKQKKVLTPE
ETKFCLLHLSLLREYLSHEFSPIKDKLPFPFDIEHIIDDWVLMGFLVGNDFIPNLPNLHI
ANGALPILYHAYMEVLPTLEGYINESGTLRLDRFEIFMERLSRIDIKNFADYYCDLKYLE
AKINKNKTTENEEQISQKNEDLSKNCFPLIKVGNLLKLSMNMEMQDAEEEKKKYSRDDGL
NYESDSDTYNMEFILHKRDYYMNKLEYEDVNEDVLRSQAECYVRAIQWNLHYYYDGCCSW
SWYYPHHYAPYISDIKGFKDLKLDFELGEPFQPFQQLLAVLPPYSKKLLPEALQSLLTEE
QSPIIDYYPSEFKTDLNGKKQDWEAIVLIPFIDEKILMKAMEPYYTKLTVEEHERNKHGP
MYMYSYDKEILGLCHTPRNLPVTENHAQVKIINCEDIYVPKDKLVKGLHPRIKLDLHFPG
FPTLKYIKHTANLKKAKVKVFEQPSRGENMILYIQQQEEPNLKQLAASLLHKNIFVEWPY
LREAHVVGISNLKWRINLKNPQIGYSSDNIVEEELKGACAVQWTSEIKSIVETYKNRFGI
DVGKTNILVHAQPLIGSKYIFAAQGKLSLEKQWQEVPTFYAYQTIVKDISTYCINPLLYK
TIDEIFVPGNNCFMLGHPHYGAMGEVISSKTSINSGRIKIYVKVVIEPDLTMVKQAYAES
KIQYIYGSTAAQRLGISSHLLSRITGTIYIMQNNINEIINVGLNLKFNKKNEEIPGYTKK
ENGQWLYSTKAVDLIRDYMAKCPRLFERLAQNITNDVFNEDELFDKSSSELSSIIAWLKE
QHFRGVESRACGANILEADIVQKLEKEVDRYYEMYNDSNKVVVMQVKPQLLFKPELYSRQ
LPPDPKSHTKLFDRIVCIRGSFTVPIGYKGTIIGIQKTKAIIESVYDVLFDKSFLGGLTF
NGCSEHRGYKLSITDFINISHGERIERGKSGVENTSIETTDSWRRYQNAKNQVHSGVKPI
TQHKPSYELQHASKQLSSEFQQLWNDLHKIEDSSGSSKTSTMTIVKSNEISKQNSKQISQ
DPSAFLKEVLKISDDNTLINLPTKSSGTSANKNQSQIHKSSDAPPLVQKLFDYARQKRNE
AKDEKNSIWYCSHLLNHYQILGMGLPRYDYFLNEQTNLIQAQILLPDAKVYLGDPCLTHA
QAAENAARKVYEELNLDKVQKPDMKLLLKPPSQQWVNMRQNSSWSQNIRPPMVLPYISKP
YQTTENPVAHCSKWNVKMQQNPGFAHMPPHNSQIKVQTKQKTKESKSEVKNSTSFVPLQA
QKKSRNVNTKQTNKETTQNHANNTQSSKQSAKQQEKKETTFPKPPKTSNKTIEKEARVQN
NLQSSPKLQKSERPKRSRVAAKFVSPPATNGSEQ
NT seq
4785 nt
NT seq
+upstream
nt +downstream
nt
atgggcatacccaaattttttagatatataagcgaaagatatccttgtctaagtgaaatg
ttgaaaaattatcagattccagaattcgataatttatatttagatatgaatggtatcata
catgcttgttcacatccaaatgatagtgatataaattttcaaattacaaatgatgaaatt
tataacaatatatttcattatattgagatattgtttggtatgattcaacctcaaaagtta
ttttttattgcaattgatggtgtagccccaagagccaaaattaatcaacaaagagcccgt
cgttttagaactgctaaagcaacagaactattagaggctgcagcaaaagcagatggtgtt
gaagtaacaccacaattatttgattctaattgtattacaccaggaacagtttttatgtct
gaaattagtaagcgattaagatattttattacgtacaaagtctcaacagataaactttgg
caaaaatgcaagattttatttagtggtccagaggttgtaggagaaggagaacataaaata
atggattatatacgacatttaaaatcacaagtagactatgatcctaatattaggcattgc
ttatatggcctagatgcagatttaatcatgttaggtctttgtacacatgaacgtaatttt
tcattactaagagaagaaataaaatttggcaagaaacaaaaaaaggttttaacacctgag
gaaacaaaattttgtcttcttcatctatcattattaagggaatatttaagtcatgaattt
tctcctattaaagataaattgccttttccttttgatattgaacatataatcgatgattgg
gtattaatgggttttcttgtgggaaatgactttatacctaatttaccaaatttacatatt
gcaaatggggcattaccaattttgtatcatgcatatatggaagttctaccaactttagaa
ggttatataaatgaatcaggaacactaagattagatcgttttgaaatattcatggaacga
ctaagtcgcattgacataaagaattttgcagactattactgtgatctcaaatatttagaa
gctaaaataaataaaaataagactacagaaaatgaagaacaaatttctcaaaaaaacgag
gatttatctaaaaattgttttcctttaataaaagtaggcaatttactaaaattatccatg
aatatggaaatgcaagatgcagaagaagaaaaaaaaaaatattctcgtgatgatggatta
aattatgaatctgatagtgatacatataatatggaatttattttacacaaacgagattat
tacatgaataaattagaatatgaagatgttaatgaagatgttttgcgctcccaagcagaa
tgctatgttagagctattcagtggaatttgcattactattatgatggatgctgcagttgg
tcttggtattatccacaccattatgctccatatatctcggatataaaaggttttaaagac
ttaaaattggattttgaattgggagaaccattccaaccttttcaacaattattagcagta
ttaccgccttatagtaaaaaattactaccagaagcattgcaatcattattaactgaagaa
caatcacctattattgattattatccttctgagtttaaaactgatttaaatggcaagaaa
caagactgggaagctattgtacttataccatttattgatgaaaaaattttaatgaaggcc
atggagccctattatacaaaattgacagttgaagaacatgaaagaaataaacatggtcca
atgtatatgtattcatatgataaagagatattaggtttatgccatacacctagaaattta
cctgtaactgagaatcatgctcaagtgaaaataataaattgtgaagatatctatgttcct
aaagacaaattagtaaaaggattacatccacgtattaaattagatttacattttcctgga
tttcccactctaaaatatataaaacatacagcaaatttaaagaaagctaaggtgaaagta
tttgaacaaccatcaagaggtgaaaatatgattttatatatacaacaacaagaagaacca
aatttaaaacaacttgctgcctctttattacataaaaacatctttgtggagtggccttat
ctacgagaagctcatgttgttggtatatctaatcttaaatggagaataaatttaaagaat
ccacaaataggatattcttctgacaatatagtggaggaagaattaaaaggagcttgtgca
gttcaatggacttcggaaataaaatctattgttgaaacgtataaaaatcgttttggtata
gacgttggcaaaactaatattttggtccatgcacaaccattaataggcagtaaatacatt
tttgcagcacaaggaaaactgtctctagaaaaacagtggcaagaagtgccaacgttttat
gcttatcaaactatagttaaagatatttctacatattgtataaatcccttattgtataaa
acaattgatgaaatatttgtaccaggaaataattgcttcatgttaggccatccacattat
ggtgcaatgggagaggttattagttcaaagactagtataaactctggcaggataaaaata
tatgtgaaagttgtaattgaaccagatttaactatggtgaaacaagcatatgcagaatca
aaaatacaatatatttatggaagtacagctgctcagcgactaggaataagcagccatctt
ttaagtagaattactgggacaatttatattatgcagaacaatataaacgaaattattaac
gtcggattaaatctaaaatttaataaaaagaatgaagaaataccaggctataccaaaaaa
gaaaatggtcaatggttgtatagtacaaaagctgttgatcttatacgtgattatatggca
aagtgcccccgtttgtttgaacgattggctcaaaatattacaaatgatgtttttaatgaa
gatgaattatttgataaatcatcaagtgaattaagtagtataatagcttggttaaaagag
caacatttccgaggagtagagagtcgtgcatgtggagcaaatatactcgaagcagatata
gtacaaaaactagaaaaagaagtggacagatattatgaaatgtataatgattcaaacaaa
gtagtcgtaatgcaagtgaagccacaattactttttaaacctgaactatattcacgtcag
cttccacccgatccaaaatctcatacaaaactattcgatagaattgtttgtatcagagga
agctttactgtacctattggttataaaggaactattataggaattcagaaaacgaaggca
attatagaaagtgtttatgatgtcttatttgataaatcatttttaggtggactaacgttc
aatggatgttccgagcatcgtggatataagttatcaattactgactttattaatattagt
catggcgaacgaatagaacgtggaaaatcgggggtagaaaatacatccattgaaacaaca
gattcttggagacgatatcaaaatgcaaaaaatcaagtacacagtggtgttaaacccata
acacaacataagccttcctacgaattacaacatgcttcgaaacaactatcctccgaattt
cagcaattatggaatgacttgcataaaatagaggattcaagcggatcttcgaaaacttca
accatgactatcgtaaaatctaatgaaatcagtaaacaaaacagtaaacaaatatcacaa
gatcccagcgcttttttgaaagaagtgctgaaaatttctgatgacaacacgctgataaat
ttgccaactaaatcaagtggtacttccgcgaataaaaatcaatcccaaatccataaatca
tcggatgccccaccattagttcaaaagttatttgattacgctagacaaaagagaaacgag
gcaaaagacgaaaaaaattctatttggtattgttcacacttattaaatcattatcaaata
cttggtatgggtctaccaagatatgattattttttaaatgaacaaacgaatttgatacaa
gctcaaattcttctaccagatgcaaaagtatatttaggtgatccttgtttgactcatgca
caagcagcagaaaatgcagcaagaaaagtatatgaggaattaaatttagataaagtacag
aagcctgatatgaaacttttattaaaacctccgtcgcaacaatgggtcaatatgcggcaa
aatagttcctggtcacaaaacataagacctcccatggtattaccatatatatcgaaacct
tatcaaactactgaaaatccagtggcacattgttcaaaatggaatgtgaaaatgcaacaa
aatccaggatttgcccatatgccacctcataatagtcaaattaaagtacagacgaaacag
aagacaaaagaatctaaatcggaagtaaaaaacagtacatcgttcgtaccgttgcaagcc
caaaagaaaagtagaaacgttaatacaaaacaaactaacaaagaaacaacgcagaatcat
gcaaacaatactcagtcgagtaaacaatcagcaaagcaacaagagaagaaagaaacaaca
ttccctaagcctccaaaaacatcaaacaaaactattgagaaagaagcacgtgtacaaaac
aatttacaatcatcgccaaaattacaaaaatctgaacgacctaaacggtcacgcgttgct
gccaaatttgtttcacctccagcgacaaatggaagtgaacagtaa
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integrated database retrieval system
