KEGG   Vespula pensylvanica (western yellowjacket): 122630347
Entry
122630347         CDS       T07720                                 
Name
(RefSeq) helicase SKI2W
  KO
K12599  antiviral helicase SKI2 [EC:5.6.2.6]
Organism
vps  Vespula pensylvanica (western yellowjacket)
Pathway
vps03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:vps00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    122630347
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:vps03019]
    122630347
Enzymes [BR:vps01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     122630347
Messenger RNA biogenesis [BR:vps03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    eIF4F and regulatory proteins
     122630347
  mRNA degradation factors
   3'-5' decay
    Ski complex
     122630347
SSDB
Motif
Pfam: DSHCT Ski2_N DEAD ResIII DEXQc_Suv3 Helicase_C MTR4_beta-barrel ATPase_2
Other DBs
NCBI-GeneID: 122630347
NCBI-ProteinID: XP_043670691
LinkDB
Position
7:complement(1120493..1125460)
AA seq 1221 aa
MELPFELPPIWPEINTVLKEYIECPERLPIHQLDHAQCYWPREPDIRSLLEFDLAPLSTT
LKFDRDPVTGHIGQMQEVVLKGVGENARNSMSMNRLPGSIMDDVRGNITNIPFLPGGFDE
PTITDEMTEDIDFESNLRTLAIGFSSGVEFEADNCTPKQGSMCRPIQISEAKGEDENDIT
SKINLMALVEQEERELSFWSSTEEVEENDVQEPPQIPALEDIPLLPIEPEIPVLNISEES
SKVVEMEWAEQIDVSVPIIDYEKKIPDPAITFEYELDTFQKQAILKLEENCNVFVAAHTS
AGKTTVAEYAIALTQKHMTRVIYTSPIKALSNQKYRDFKKKFESVGLITGDVQINESASC
LIMTTEILQSMIYGASEVLRDLEFVIFDEVHYINNEDRGHVWEEIVILLPQTVNIVMLSA
TVPKPIIFANWVGRIKKRKMYVISTLKRPVPLQHYLYTPINDKDKGTLILVLDSNEEFSL
NGWHQATKNFQSVIKLPQDKSTNSKDNKRRKFSAKEEMILWKNFINYLKHNDKLPVVVFT
LSRRRCDINASRLMNIQLTTATEKMEVKRFFQHIMKYLKGSDKQLPQVCMMQNLLENGIG
IHHSGILPILKETVEMLFQTGVVKLLFATETFAMGVNMPARTVAFDSINKYDGNGFRTFY
PTEYIQMAGRAGRRGHDTTGTVIIICHREIPHFNELMPMMQGEARTLESQFKVTYSMVLN
LRRTNKLVTVEAMMRRSFKESCLILKEDKYQIDLRKVEEKLATLPPFTNIQKKLSGFYEI
AINYLQELRYLKPYMFESKKAIKSLTKGRILIISYANHYRNLAVLLTVLPRKQNGNQYKV
LILKNADAQNDNNDTLPENSSKTNTKERSENWYSIISLTKRNLFVPTGVPSHEVLTICAW
DILEITNCQIKVDCGMVLKDWEKRQISRFRHDLPGPTCQTAIQELMAISLSAANDHSILL
PYVPLKVTENLNPRMKHLCKQKQALNSMKYIDIPNFEEQFEAVFYRNELETERKKLQLSL
SDEGLSLYPDYINMVSLLKHLGYIDSDERIALKGRVALQIGINELLITELILKNVLTILQ
PAEIAALLSALIFHQKSNSESTFPVDFHHLRKEYEIMQNVYTELQQLEQIYHLNTLQPLN
FGLVEVVYEWAQSKSFAEIMQKIDVQEGIIVRCIQQLNETLQDVRNAAVTIGDPVLKEKM
EEASTAIKRDIVFAASLYTQD
NT seq 3666 nt   +upstreamnt  +downstreamnt
atggagttaccatttgagcttccaccaatctggcctgaaataaacactgtattaaaggaa
tatatagaatgccccgaacggcttccaatacatcaacttgatcatgctcaatgttattgg
cccagagaacccgatattcgttctttattagaatttgatttagcaccacttagcacaaca
ttaaaatttgatcgtgatccagtgacgggtcatattggacaaatgcaagaagttgtttta
aaaggagtaggagaaaatgcaagaaattcaatgtctatgaatcgtttgcctggatctatt
atggatgatgttagaggtaatattactaatataccatttttgccgggcggatttgatgaa
cctactataacagatgagatgacagaagatattgattttgagagtaatttaaggacacta
gcaataggatttagttctggtgtagaatttgaagctgataattgtacaccaaagcaggga
tcaatgtgtagaccaattcaaatatcagaagcaaaaggagaagatgaaaatgatataaca
agtaaaataaatttaatggctcttgtagaacaagaagaacgtgagcttagtttctggtca
tctacggaagaagtagaagaaaatgatgtacaggagcctccacaaatccctgcattagaa
gatattccattattaccaatagaaccagaaataccagttttaaatatttctgaagaatca
tctaaagttgttgaaatggaatgggcagaacaaatagatgtttctgtaccaataatagat
tatgagaagaaaattcctgatccagcaataacattcgaatatgaattggatactttccaa
aaacaggctatacttaagttagaggagaattgtaatgtttttgttgcagcacacacatct
gcaggaaaaactactgtagctgagtatgctattgctttaactcagaagcatatgacacgg
gtaatttatacttctcctataaaagcactgtcaaatcaaaaatatcgtgattttaaaaag
aaatttgaaagtgttggattaataacaggggatgttcaaatcaatgagagtgcatcttgt
ctgattatgactacagaaatattacaatcaatgatatatggagcatcagaagttcttagg
gatttagaatttgtaatatttgatgaagtacattatattaataacgaggatcggggtcat
gtatgggaagaaatagtgattcttttaccacaaactgtcaatatagttatgctgtcagca
actgtgccaaaaccaataatatttgcaaattgggttggtcgtatcaaaaaacggaaaatg
tacgtgatcagcactttaaagagacctgtaccattgcaacattatttatatactcctatt
aatgataaggacaaaggcacattaattttagttcttgattcaaatgaagaattttcattg
aatggatggcatcaggcaacaaaaaattttcaatctgttattaaactcccacaagataaa
agcactaattcaaaggataataaaagaaggaaattttctgcaaaagaagaaatgatatta
tggaagaattttataaattacttgaagcataatgataaattgcctgttgttgtatttaca
ttgtctagaagacgttgtgatattaacgcaagcagattaatgaatattcaactaactaca
gcaactgaaaaaatggaagtaaaacgcttttttcagcatattatgaaatatttgaaaggt
agtgataagcaattaccacaggtttgcatgatgcaaaatcttttagaaaacggtattggt
atacatcacagcggtatattgcctattttaaaggaaactgtagagatgcttttccaaacc
ggcgttgttaagttattatttgcaactgaaacatttgctatgggagtcaatatgccagca
cggacagtggcatttgattcgataaacaagtatgatggtaatggatttcgtactttctat
cctaccgaatacatccaaatggctggacgtgctggtcgaagaggtcatgatacaactggt
acagttataataatatgtcatagagaaattccacactttaatgaattaatgcctatgatg
caaggcgaagcaagaacattggaatcacaatttaaagtaacatattctatggttttaaat
ttgagaagaacaaacaaattagttactgtagaagcaatgatgcgcagatcgtttaaagaa
tcatgtctaatcttaaaagaagataaatatcaaatcgatttacgtaaagtcgaagaaaaa
ttagcaacattaccaccattcacaaatatacaaaagaaattatctggtttctatgaaata
gcgattaattatttacaagaacttcgttatttgaaaccttatatgtttgaatctaaaaaa
gcaataaaaagtttaactaagggtagaattttaatcatatcatatgcaaatcattataga
aacttagctgtactactgactgtacttccacgtaaacaaaatggaaatcaatataaagta
ttaatactaaaaaatgcagatgcacaaaatgataacaatgatacattaccagaaaattct
agcaaaactaacactaaagaaagatctgaaaattggtatagcattattagtctaaccaaa
agaaatttatttgtaccaactggagttccatcacatgaagttttaacgatttgtgcatgg
gacatactagaaatcacaaattgtcaaattaaagttgattgcggtatggtgttaaaagat
tgggaaaaaagacaaatatcaagatttaggcatgatctacctggtccaacttgtcaaaca
gccattcaagaattaatggcaatatctttaagtgctgctaatgatcatagtatattatta
ccttatgtaccactgaaagtaactgaaaatctaaatcccagaatgaaacatttatgcaag
cagaaacaagctcttaacagcatgaagtatattgatatccctaactttgaagaacaattt
gaagctgtattttatcgaaatgaattggaaacagaacgaaaaaaacttcaactaagtctt
agcgatgaaggattatctttatatccagattatataaatatggtttcacttcttaaacat
ctaggatatatagatagcgatgaaagaattgccttaaaaggtagagttgcattgcaaata
ggaattaatgaattacttataacagagttaattctaaaaaatgttttaactattttgcaa
ccggctgaaattgctgcactattatctgctttgatatttcatcaaaaatcaaattccgaa
tcgacatttccagttgatttccatcatttgagaaaggaatatgaaatcatgcaaaacgta
tacactgagttacaacaattagaacaaatttatcatttgaatacactacaaccattgaat
tttggtttggtggaagttgtttatgaatgggcacaatcaaaatcatttgctgaaataatg
cagaaaattgatgtgcaagaaggtatcatagttagatgcattcaacaacttaatgagacc
ttgcaagatgtaagaaatgcagctgtgacaattggtgatccagttttaaaagaaaaaatg
gaagaagcatccacggcaataaaacgtgatatagtttttgccgcgtctttatatactcaa
gattaa

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