Entry |
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Name |
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KO |
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Organism |
vps Vespula pensylvanica (western yellowjacket)
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Pathway |
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Brite |
KEGG Orthology (KO) [BR:vps00001]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122630347
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:vps03019]
122630347
Enzymes [BR:vps01000]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
122630347
Messenger RNA biogenesis [BR:vps03019]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
122630347
mRNA degradation factors
3'-5' decay
Ski complex
122630347
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SSDB |
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Motif |
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Other DBs |
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LinkDB |
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Position |
7:complement(1120493..1125460)
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AA seq |
1221 aa
MELPFELPPIWPEINTVLKEYIECPERLPIHQLDHAQCYWPREPDIRSLLEFDLAPLSTT
LKFDRDPVTGHIGQMQEVVLKGVGENARNSMSMNRLPGSIMDDVRGNITNIPFLPGGFDE
PTITDEMTEDIDFESNLRTLAIGFSSGVEFEADNCTPKQGSMCRPIQISEAKGEDENDIT
SKINLMALVEQEERELSFWSSTEEVEENDVQEPPQIPALEDIPLLPIEPEIPVLNISEES
SKVVEMEWAEQIDVSVPIIDYEKKIPDPAITFEYELDTFQKQAILKLEENCNVFVAAHTS
AGKTTVAEYAIALTQKHMTRVIYTSPIKALSNQKYRDFKKKFESVGLITGDVQINESASC
LIMTTEILQSMIYGASEVLRDLEFVIFDEVHYINNEDRGHVWEEIVILLPQTVNIVMLSA
TVPKPIIFANWVGRIKKRKMYVISTLKRPVPLQHYLYTPINDKDKGTLILVLDSNEEFSL
NGWHQATKNFQSVIKLPQDKSTNSKDNKRRKFSAKEEMILWKNFINYLKHNDKLPVVVFT
LSRRRCDINASRLMNIQLTTATEKMEVKRFFQHIMKYLKGSDKQLPQVCMMQNLLENGIG
IHHSGILPILKETVEMLFQTGVVKLLFATETFAMGVNMPARTVAFDSINKYDGNGFRTFY
PTEYIQMAGRAGRRGHDTTGTVIIICHREIPHFNELMPMMQGEARTLESQFKVTYSMVLN
LRRTNKLVTVEAMMRRSFKESCLILKEDKYQIDLRKVEEKLATLPPFTNIQKKLSGFYEI
AINYLQELRYLKPYMFESKKAIKSLTKGRILIISYANHYRNLAVLLTVLPRKQNGNQYKV
LILKNADAQNDNNDTLPENSSKTNTKERSENWYSIISLTKRNLFVPTGVPSHEVLTICAW
DILEITNCQIKVDCGMVLKDWEKRQISRFRHDLPGPTCQTAIQELMAISLSAANDHSILL
PYVPLKVTENLNPRMKHLCKQKQALNSMKYIDIPNFEEQFEAVFYRNELETERKKLQLSL
SDEGLSLYPDYINMVSLLKHLGYIDSDERIALKGRVALQIGINELLITELILKNVLTILQ
PAEIAALLSALIFHQKSNSESTFPVDFHHLRKEYEIMQNVYTELQQLEQIYHLNTLQPLN
FGLVEVVYEWAQSKSFAEIMQKIDVQEGIIVRCIQQLNETLQDVRNAAVTIGDPVLKEKM
EEASTAIKRDIVFAASLYTQD |
NT seq |
3666 nt +upstreamnt +downstreamnt
atggagttaccatttgagcttccaccaatctggcctgaaataaacactgtattaaaggaa
tatatagaatgccccgaacggcttccaatacatcaacttgatcatgctcaatgttattgg
cccagagaacccgatattcgttctttattagaatttgatttagcaccacttagcacaaca
ttaaaatttgatcgtgatccagtgacgggtcatattggacaaatgcaagaagttgtttta
aaaggagtaggagaaaatgcaagaaattcaatgtctatgaatcgtttgcctggatctatt
atggatgatgttagaggtaatattactaatataccatttttgccgggcggatttgatgaa
cctactataacagatgagatgacagaagatattgattttgagagtaatttaaggacacta
gcaataggatttagttctggtgtagaatttgaagctgataattgtacaccaaagcaggga
tcaatgtgtagaccaattcaaatatcagaagcaaaaggagaagatgaaaatgatataaca
agtaaaataaatttaatggctcttgtagaacaagaagaacgtgagcttagtttctggtca
tctacggaagaagtagaagaaaatgatgtacaggagcctccacaaatccctgcattagaa
gatattccattattaccaatagaaccagaaataccagttttaaatatttctgaagaatca
tctaaagttgttgaaatggaatgggcagaacaaatagatgtttctgtaccaataatagat
tatgagaagaaaattcctgatccagcaataacattcgaatatgaattggatactttccaa
aaacaggctatacttaagttagaggagaattgtaatgtttttgttgcagcacacacatct
gcaggaaaaactactgtagctgagtatgctattgctttaactcagaagcatatgacacgg
gtaatttatacttctcctataaaagcactgtcaaatcaaaaatatcgtgattttaaaaag
aaatttgaaagtgttggattaataacaggggatgttcaaatcaatgagagtgcatcttgt
ctgattatgactacagaaatattacaatcaatgatatatggagcatcagaagttcttagg
gatttagaatttgtaatatttgatgaagtacattatattaataacgaggatcggggtcat
gtatgggaagaaatagtgattcttttaccacaaactgtcaatatagttatgctgtcagca
actgtgccaaaaccaataatatttgcaaattgggttggtcgtatcaaaaaacggaaaatg
tacgtgatcagcactttaaagagacctgtaccattgcaacattatttatatactcctatt
aatgataaggacaaaggcacattaattttagttcttgattcaaatgaagaattttcattg
aatggatggcatcaggcaacaaaaaattttcaatctgttattaaactcccacaagataaa
agcactaattcaaaggataataaaagaaggaaattttctgcaaaagaagaaatgatatta
tggaagaattttataaattacttgaagcataatgataaattgcctgttgttgtatttaca
ttgtctagaagacgttgtgatattaacgcaagcagattaatgaatattcaactaactaca
gcaactgaaaaaatggaagtaaaacgcttttttcagcatattatgaaatatttgaaaggt
agtgataagcaattaccacaggtttgcatgatgcaaaatcttttagaaaacggtattggt
atacatcacagcggtatattgcctattttaaaggaaactgtagagatgcttttccaaacc
ggcgttgttaagttattatttgcaactgaaacatttgctatgggagtcaatatgccagca
cggacagtggcatttgattcgataaacaagtatgatggtaatggatttcgtactttctat
cctaccgaatacatccaaatggctggacgtgctggtcgaagaggtcatgatacaactggt
acagttataataatatgtcatagagaaattccacactttaatgaattaatgcctatgatg
caaggcgaagcaagaacattggaatcacaatttaaagtaacatattctatggttttaaat
ttgagaagaacaaacaaattagttactgtagaagcaatgatgcgcagatcgtttaaagaa
tcatgtctaatcttaaaagaagataaatatcaaatcgatttacgtaaagtcgaagaaaaa
ttagcaacattaccaccattcacaaatatacaaaagaaattatctggtttctatgaaata
gcgattaattatttacaagaacttcgttatttgaaaccttatatgtttgaatctaaaaaa
gcaataaaaagtttaactaagggtagaattttaatcatatcatatgcaaatcattataga
aacttagctgtactactgactgtacttccacgtaaacaaaatggaaatcaatataaagta
ttaatactaaaaaatgcagatgcacaaaatgataacaatgatacattaccagaaaattct
agcaaaactaacactaaagaaagatctgaaaattggtatagcattattagtctaaccaaa
agaaatttatttgtaccaactggagttccatcacatgaagttttaacgatttgtgcatgg
gacatactagaaatcacaaattgtcaaattaaagttgattgcggtatggtgttaaaagat
tgggaaaaaagacaaatatcaagatttaggcatgatctacctggtccaacttgtcaaaca
gccattcaagaattaatggcaatatctttaagtgctgctaatgatcatagtatattatta
ccttatgtaccactgaaagtaactgaaaatctaaatcccagaatgaaacatttatgcaag
cagaaacaagctcttaacagcatgaagtatattgatatccctaactttgaagaacaattt
gaagctgtattttatcgaaatgaattggaaacagaacgaaaaaaacttcaactaagtctt
agcgatgaaggattatctttatatccagattatataaatatggtttcacttcttaaacat
ctaggatatatagatagcgatgaaagaattgccttaaaaggtagagttgcattgcaaata
ggaattaatgaattacttataacagagttaattctaaaaaatgttttaactattttgcaa
ccggctgaaattgctgcactattatctgctttgatatttcatcaaaaatcaaattccgaa
tcgacatttccagttgatttccatcatttgagaaaggaatatgaaatcatgcaaaacgta
tacactgagttacaacaattagaacaaatttatcatttgaatacactacaaccattgaat
tttggtttggtggaagttgtttatgaatgggcacaatcaaaatcatttgctgaaataatg
cagaaaattgatgtgcaagaaggtatcatagttagatgcattcaacaacttaatgagacc
ttgcaagatgtaagaaatgcagctgtgacaattggtgatccagttttaaaagaaaaaatg
gaagaagcatccacggcaataaaacgtgatatagtttttgccgcgtctttatatactcaa
gattaa |