Vespula pensylvanica (western yellowjacket): 122633136
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Entry
122633136 CDS
T07720
Name
(RefSeq) symplekin
KO
K06100
symplekin
Organism
vps
Vespula pensylvanica (western yellowjacket)
Pathway
vps03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
vps00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
122633136
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vps03021
]
122633136
03019 Messenger RNA biogenesis [BR:
vps03019
]
122633136
Transcription machinery [BR:
vps03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
122633136
Messenger RNA biogenesis [BR:
vps03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
122633136
U7-dependent histone pre-mRNA processing factors
122633136
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
Atrophin-1
Motif
Other DBs
NCBI-GeneID:
122633136
NCBI-ProteinID:
XP_043676628
LinkDB
All DBs
Position
1:complement(10953648..10959548)
Genome browser
AA seq
1112 aa
AA seq
DB search
MDPRIHRRLESEKGPGDLIVEWLNEASTCLAVDVKVSNLCKVQEILFNKEPQLLPLYLDE
TIQFSLDRIAEVRKTVTGFIEEAGVKQPETIPRIVPVLLRLVSDKAPLVAKRALRASGRI
LRAALKWISYAAVVTSEMEMAWTQLSSLKIQIINMIDSDNDGIRTQAVKFLEGVVLIQTY
PDADAPKKPDDFSLEDIPLTLKIARRRKLEEEANHVMDLLIKFHGSPHVSSVNLMTCMGS
LALIAKIRPQFMSSVIQALQKLQHDLPPTLSDSQVTSVQKQLKLTLLGLMKHPSGIEFAS
TIAKLLAQLGAKEQEIIKAYPKPEDVRRIKKRQQEAAIAIAAKRAKIDTPLILEETEAVA
SPVPVPKLPELIELSESFIAERLSVEIATELVMDSMAWVPDTMTTIFQREYQPTSTTDIN
VQCQTIAKLLAAQIKQAKAKKNKKDAKDEDAVMEDLIKNPTISVAEAKRERKREKDREKE
KEAKASLEAHEKSLAKARNRLKSLKLSEVTKPLTKDGKETMLLMAVNRILLAEKVAVLGG
VSAVRSKILTTLAATFNPYIKEAVLHYITDDMRNRLDLALGWLYEEYALLQGFQRRTTLS
TKPQEAPHQAYNFLLCTLVSAIDLVQGKDRDTLLYRLYLEAPLITEDAVEALKMVSSDET
RGLAPLQLLKEMVIRRPTKQLVFLNVLLCHTGHENNAIREVAIQLVCQLYGRLELSKLIE
EYAVLYLGFLRLQTPPEIVFGQDRGRPQIENQWTESTTRACLGLYLALLSEHQDLIHELA
RVYTSMGADVKRMVLRLVEGPVRSLGMGSPQLLALVENCPKGAETLVTRIIHILTEKSIP
SAELVARVRELYQTRVSDVRFLIPVLNGLTKKEVIAALPKLIKLNPIVVKEVFNRLLGTH
NNDSGVPHTSPITPAELLIALHNIDPSKAELKTVIKATSLCFAENQVYTQETVAVVIQHL
MEMTPLPTLLMRTVIQSLALYPRLSGFVMNILQRLILKQVWKQPKVWEGFVKCCERTKPQ
SFAVILQLPPTQLSEALKMAPNLRAPLLAHVEAFAENQKAHIPQSIMDVIQGKSLCDMHD
EFDIAPPGDYPSEQKTDTTETDLSEPAPPGLD
NT seq
3339 nt
NT seq
+upstream
nt +downstream
nt
atggatccacgaatacataggagattagaatcggaaaaagggccgggcgatttgattgtt
gaatggttaaatgaagcttctacgtgccttgctgtagatgtaaaagtttctaatttatgt
aaagtccaagaaattttatttaacaaggaacctcaattgcttccattgtatttggatgaa
accatacaattttctttagacagaattgctgaagttagaaagacagttacagggtttatt
gaagaagcaggggtaaaacaaccagaaacaataccacgaatagttccagtattattaaga
cttgtttctgacaaagcacctttagtagctaaaagagctcttcgagctagtggaagaatt
cttagagcagctttaaaatggatttcttatgcagctgtggtaacatcagaaatggaaatg
gcatggactcaacttagttctctaaaaattcaaattattaatatgatagatagtgataat
gatggtattagaacacaagcagtaaaatttttagaaggagttgttttgattcaaacttat
ccagatgcagatgctccaaaaaaaccagatgatttctctctcgaagatattccattaaca
ttaaaaatagctcgtagacggaaattagaagaagaagcgaatcatgtaatggatttacta
attaaatttcatggatccccacatgttagtagtgtcaatttaatgacatgtatgggttcc
ttggctttaattgctaaaattagaccacaatttatgtctagtgtaattcaagctttacag
aagttacaacatgatttacctcctaccttgtctgattctcaagttacaagtgtacagaag
cagttaaaacttactctgcttggattaatgaaacatccatctggtatagaatttgcttca
actattgctaagttattagctcagcttggtgccaaagaacaggaaattattaaagcttat
cctaagccagaagatgtcagacgcattaaaaaacgtcaacaagaagcagcaattgcaatt
gctgctaagcgtgcaaaaattgatactcctttaatacttgaagaaactgaagcagtagca
agtccagttccagtacccaaattaccagagttaattgaactttctgaaagttttatagca
gaaagattaagtgtagaaatagccacagaattagtaatggatagtatggcatgggttcca
gatactatgacaacaatttttcaaagagaatatcaaccaacttcaacaacagatataaat
gtacaatgtcaaacgattgcaaaacttttagctgcacaaattaaacaagcaaaagcgaag
aaaaataaaaaagatgccaaagatgaggatgctgtaatggaagatttgataaaaaatcca
actattagcgtagccgaagcaaaacgagaacgaaaacgtgagaaagatagagaaaaggaa
aaagaggcaaaagcatcattagaagcacatgaaaaatcgcttgccaaagcaaggaatcgt
ttgaaatctttaaaattatcagaagttacaaaaccacttactaaggatggaaaggaaaca
atgctgttaatggcagttaacagaattctgcttgcagaaaaagttgcagttcttggtggt
gtttctgctgtaaggtcaaaaatcttaacaactttagcagcaacttttaatccatatatt
aaagaagcagtactacattatattacagatgatatgagaaatcgcctagatttagcctta
ggctggttgtatgaggaatatgccttattacaaggttttcaaaggcgaacaacattaagt
acaaaaccacaagaagcaccacatcaagcctacaatttcttgttatgtactttagtttct
gcaatagacttagttcaaggaaaggatcgtgacactttattgtatagattgtacttagaa
gcacctttgataacggaagatgcagtggaggctttgaagatggtttcttcagacgaaaca
agaggtcttgcaccattgcaacttttgaaagaaatggttatcagaagacctacaaaacag
ttagtttttttgaatgtactattatgtcatacaggacacgaaaataatgcgataagagag
gtagcaatacaattggtttgtcaattatatggccgactcgaattaagcaaacttatagag
gaatatgcagttctttatttaggttttttacgtttgcaaactcctcctgaaatagttttt
ggtcaagatagaggaagacctcaaatagaaaaccaatggacagaatccactactagagct
tgcctaggattatatcttgctttattaagtgaacatcaagatctcattcatgagttagca
agagtttatacatcgatgggagctgatgtaaaacgtatggttctcagattagttgaagga
cctgtaagatcgttaggcatgggtagtccgcaattacttgcacttgttgaaaattgtcca
aaaggagcagagactttggtcactagaattatacacattcttacagaaaaatctattcca
agcgcagaattagtagcaagagtacgagaattatatcaaacaagagtctcagatgtaaga
tttctaatacctgttttaaatggcttgaccaaaaaagaagttattgctgctcttcccaaa
ctaataaaattgaaccctattgttgtcaaagaggtatttaatagacttcttggtacacat
aacaatgatagtggtgtaccacatacatctccaatcacgcctgcagaattattgatagct
ttacataatattgatcctagcaaagcagaattgaaaactgttataaaagcaacttcttta
tgctttgcggaaaatcaagtttacacacaagaaactgttgccgttgtaatacaacatcta
atggaaatgacgcccttacctacgttattaatgcgtactgttatacagagcttagctctt
tatcctagacttagtggatttgttatgaatattcttcagcgcttgatacttaaacaagta
tggaaacaacccaaagtttgggaaggtttcgttaaatgctgcgaacgtacaaagccacag
agttttgctgttattttacagttaccaccaacacaattatctgaagcattaaaaatggct
ccaaatttaagagcacctttgttagctcatgttgaagcatttgctgaaaatcagaaggca
cacattccacagtccataatggatgttatacaaggcaaatcactatgtgatatgcatgat
gaatttgatattgcacctcctggtgattatccatctgaacaaaaaacagatacaacagaa
acggatttatcagaaccagcaccccctggtttagactag
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integrated database retrieval system
