Vespula pensylvanica (western yellowjacket): 122633619
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Entry
122633619 CDS
T07720
Name
(RefSeq) collagen alpha-1(XVIII) chain isoform X1
KO
K06823
collagen type XVIII alpha
Organism
vps
Vespula pensylvanica (western yellowjacket)
Brite
KEGG Orthology (KO) [BR:
vps00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
vps04147
]
122633619
00535 Proteoglycans [BR:
vps00535
]
122633619
00536 Glycosaminoglycan binding proteins [BR:
vps00536
]
122633619
Exosome [BR:
vps04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
122633619
Proteoglycans [BR:
vps00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
122633619
Glycosaminoglycan binding proteins [BR:
vps00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
122633619
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
Laminin_G_3
DUF1554
Motif
Other DBs
NCBI-GeneID:
122633619
NCBI-ProteinID:
XP_043677647
LinkDB
All DBs
Position
1:complement(11188107..11398349)
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AA seq
1167 aa
AA seq
DB search
MWPRILFLVFLVLRTIHGRSDFFGEKKETVYDLLVTTVTPTDDLNFYIDDGLDGFPAFGF
RPGSEVKQPYRLYLPEKLPAEFTLLAIFKPISFRTSYLFAVLNPFETVVQLGIRISDGPG
SNQNISLVYTNSDEHSHSEEVAKFTVPKLTKKWSKIVIKVSITDVTLYLNCHEMARQKVT
RIPLELVFDTASTLYMAQAGPHIQERYDGLLQSLKLYSGHPQDLVKCTADFDFLSDGEFG
SGDQDVDTFGVIGEIDFDKIDREYDEDKNEEGNPPPFITPPPPNPDYKGPKGEKGEKGDK
GESVRGPPGPPGPPGPGYDPNDEDWPIKIPHGPIGPKGEPGECTCNATALMTSFTMPKMI
EGPKGEPGVPGKEGKQGQMGLTGAAGPPGERGLQGPPGPKGDKGDIGIQGPEGPQGQKGE
PGRDGIPGEKGAQGPPGPPGKGEFSGYDPSWKPRGIYRTEGITMRPGLPGQKGEAGTAGN
PGPKGEAGIPGGKGVKGEPGHKGGKGEHGKEGPRGIQGFKGEPGAPGAPGLPGAPGENGR
PAEKGDKGDAGPEGKPGPPGPPGSPGPSGPGGINVGDTGLEEKGEKGESGPRGYKGDQGT
KGEKGDKGESGPAGIPGVNGIQGPQGDKGEPGKDGVPGASGIPGLKGERGEKGPPGVTAI
ANSGDYITIKGEKGAEGKRGRRGRPGPPGPVGPPGKPGVMGEIGLPGWMNNIKGRPGTPG
IPGSPGSTGSKGEKGEPGAPSSYGISVGRKGEKGDDGMPGIPGQHGRDGQRGPAGPPGPP
GPPSQGNYVPVPGPPGPPGPPGPPGLSLIGQKGEPGIGRSHIFGERDYYGMRQGPRSSLD
ELKALRELKQLKELKEHLGSVTAATRGPLESTTKIVPGAVTFQNTEAMTKMSSVSPVGTL
AYIIDEQALLVRVNNGWQYIALGSLLPITTPAPPTTAPPPANPPFEASNLINQIPVKADG
TGWYPRMLRMAALNEPFTGDMHGVRGADYACYRQAKRAGLRGTFRAFLSSRVQNVDSIVR
LGDRDLPIVNIKGDVLFNSWKEMFNGNGAYFSQNPRIYSFNGKNILTDFAWPEKVAWHGS
HKLGDRAMDTYCDAWHSSSSDRYGLGSPLTGGRLLEQVRYSCDNKFALLCIEVTSEVTRR
RRNSDAVEDVEMTESDYKRHLEALMKN
NT seq
3504 nt
NT seq
+upstream
nt +downstream
nt
atgtggcctagaatattgttcctggtctttctcgttctccgaacgatccatggccgatcg
gatttctttggagagaaaaaggaaacagtttatgatctgctcgtaactacggtgacaccg
acggatgacctcaatttttatatcgatgatggcctcgacggatttccggcttttggtttc
cgacctggatctgaagtgaaacaaccctatagactctatcttcctgagaagttgccggcc
gagtttactctgttggctatttttaagccgatttcctttcggactagctacctcttcgca
gttctcaatccctttgaaactgttgtgcaattgggcattcgaatttcggatggtccaggt
tctaatcagaatatttcgttggtctacacgaactccgatgagcattcccattcggaggaa
gttgccaaattcaccgttccaaagttgacaaagaaatggtctaagatcgtcatcaaagtg
tccattaccgatgtcaccttatatctgaattgtcatgagatggctaggcagaaggttacc
aggattcccttggaattagtttttgacactgccagtacactttacatggctcaagctgga
ccacatattcaagagagatacgatggtctacttcaatctctgaaactctactctggacat
ccacaggatctggtaaagtgcacggctgactttgactttctctcagacggagaatttgga
tctggcgatcaggatgtcgatacattcggtgttatcggagaaattgactttgataagatc
gatcgagaatacgacgaagataaaaacgaggaaggcaacccaccgccgttcatcacacct
ccacctcccaatccagactacaaaggtccgaaaggtgagaaaggtgaaaagggagataaa
ggcgagagcgttcgaggaccaccaggacctcctggaccacctggacctggatatgatcca
aacgatgaggattggcccataaaaataccacacggtccgataggtcctaaaggagaacca
ggtgaatgtacgtgcaatgcaacagccttgatgacatcctttacgatgccaaaaatgatc
gaaggaccgaaaggtgaaccaggtgttcctggaaaagaaggaaagcaaggccagatggga
ctaactggtgcagcaggaccacccggagaaagaggattacaaggtccacctggaccaaaa
ggtgacaaaggagatataggaatacaaggacccgaaggtcctcaaggacaaaaaggtgaa
ccaggcagggatggaataccaggtgaaaagggagctcaaggacctcctggaccaccgggc
aagggcgaattctctggctacgatcccagttggaagccgcgaggcatttacaggaccgaa
ggtatcacgatgagaccaggtctgccaggacagaaaggtgaagcaggtacagcaggaaat
cctggtcctaaaggagaagccggaattccgggtggaaagggcgtcaaaggagaacctggt
cacaaaggtggaaaaggcgaacacggaaaggaaggaccaagaggtattcaaggatttaaa
ggagaaccaggagctccaggagcaccaggacttcctggtgcacctggagaaaatggaaga
ccagcagaaaagggtgacaagggcgatgctggacccgaagggaaaccaggtccacctggt
ccaccaggatcaccaggacctagtggtccaggtggtataaacgttggagatacaggatta
gaggagaagggcgagaagggtgaatccggaccacgtggttacaaaggcgatcaaggaact
aaaggcgagaaaggagataaaggggagtccggaccagccggtataccgggtgtaaatgga
attcaaggaccgcaaggagataaaggcgaacccggtaaagacggagttcccggagcttct
ggaattccgggtttaaagggagaaaggggtgaaaagggtcctcccggtgttaccgccatt
gccaattccggtgactatattaccatcaaaggagaaaagggtgcagaaggtaaaagagga
agaagaggtcgtcctggaccaccaggtcctgttggaccacccggaaagccaggagtaatg
ggagaaattggtctaccaggatggatgaataatataaagggtcgtcctggaacaccagga
attccaggaagtccaggctcaactggatcgaaaggagaaaagggagaaccaggagcacca
agttcttatggaatctcagttggtaggaaaggtgaaaaaggagatgacggaatgccggga
attccaggacagcatggaagagacggacaacgaggaccagcaggaccaccgggtccacct
ggtccaccttctcaaggaaactatgttcctgtaccaggaccaccaggtcctccaggacct
ccaggtccacctggactctctttaatagggcaaaaaggcgaaccaggaattggaagaagt
catattttcggagaaagagattattacggaatgagacaaggacccagaagcagtctggac
gaattgaaggcacttcgcgagttaaagcagctgaaagaattaaaggaacatttaggttct
gttactgcggctacgagaggtcctttggaaagtacaacaaagattgttccaggagcagta
acgtttcaaaatacggaagctatgacaaaaatgtccagtgtcagtccagtcggtactctg
gcctatatcatagacgaacaagccttgcttgtaagagttaacaatggatggcaatacata
gcgcttggctctcttcttccaataacaacccctgcaccaccaacgactgcaccacctcca
gcaaatccacctttcgaagcttcaaacttgataaatcaaataccagtgaaggcggacggt
acaggatggtatcctcgaatgttgagaatggcagcactaaacgaaccatttaccggagac
atgcatggtgtaagaggtgcggattacgcttgttatcgtcaagcaaagagagcaggcttg
agaggtaccttccgtgcattccttagctctagagttcaaaacgtcgatagtatcgtcaga
cttggagatcgtgatcttccgatcgttaacatcaagggtgacgttcttttcaattcgtgg
aaggaaatgttcaatggcaatggagcctacttttctcaaaacccaaggatctatagtttc
aatgggaaaaatatcctcacagactttgcctggccggaaaaagtagcatggcatggttcg
cacaagctcggagatcgagcgatggacacttattgcgatgcttggcattcaagcagttct
gatcgttacggattaggatcacctctaacaggaggtcgacttttggagcaagttcgttat
tcctgcgataacaagtttgccctactctgcatagaagtgaccagcgaggtcacgagaaga
cgaagaaacagcgatgctgtggaagatgtagagatgacagagagcgattataagagacac
ttggaagcgttaatgaaaaattga
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integrated database retrieval system
