Vespula pensylvanica (western yellowjacket): 122634538
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Entry
122634538 CDS
T07720
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
vps
Vespula pensylvanica (western yellowjacket)
Pathway
vps03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vps00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122634538
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
vps03041
]
122634538
Enzymes [BR:
vps01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
122634538
Spliceosome [BR:
vps03041
]
Complex C
Other components
Step II factors
122634538
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_N
HA2_C
DEAD
AAA_22
AAA_19
nSTAND3
Flavi_DEAD
AAA_16
T2SSE
AAA_30
ABC_tran
PhoH
ATPase_2
AAA_7
AAA_24
Sigma54_activ_2
Sigma54_activat
cobW
ATPase
AAA_23
Motif
Other DBs
NCBI-GeneID:
122634538
NCBI-ProteinID:
XP_043679504
LinkDB
All DBs
Position
15:89012..94482
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AA seq
1128 aa
AA seq
DB search
MSEDSNLYRLEGSDNKPGGLIIRKKVSDHTFKKPQSSILGLDKLAERKRRENSQEPTESK
SRLDTKERKYRSHEEETPTHTGGVNSEAQKRLETRLKHQRLSAQEKHSRYHDRDRDRRKD
RDKERSRSRDSIRQTPLRFKDEPQTPKFRTKDPISKSNWDDDEDEEPRKSSWDHPTPNLY
ASRDGRESVRSEFTPSYKYNSWNKDYRPSGTTPMIDGEEKELWEEEQQRLDREWYALDDG
ENYAFADVSEEYTQKKEMELEAKRQKRVSAQQRQINKDNELWERNRMLTSGVVSSLDHDD
DPDDEAEGRVHLLVHNVVPPFLDGRIVFTKQPEPVVPVRDPTSDMALVARKGSALVRAYR
EQKERRRAQKKHWELAGTHIGNIMGVRDRRKEDKELPGQETDFKAGQKYARHIGAGEITG
EAKHRSIQHQRRSLPVFAVRQELLNVIRENSVVVIVGETGSGKTTQLTQYLHEDGYSCYG
IIGCTCPRRVAAMSVAKRVSDEMATALGEKVGYAIRFEDCTSKDTVIKYMTDGILLRESL
REGDLDRYSVIIMDEAHERSLSTDVLFGLLREVVARRHDLKLIVTSATMDSSKFSAFFGN
AATFQIPGRTFPVEILHAKNPVEDYVDAAVKQVLQIHLQPRSGDILVFMPGQEDIEVTCE
ALKERLAEIESAPPLSILPIYSQLPSDLQAKIFQRSEGGLRKCVVATNIAETSLTVDGIV
FVVDSGYCKLKVYNPRIGMDALQVYPVSRANADQRAGRAGRTGPGYCYRLYTRRQYLDEL
LATGVPEIQRTNLANTVLLLKSLGVQDLLAFHFMDPPPQDNILNSLYQLWILGALDHTGR
LTPLGRQMAEFPLDPPQCQMLIVASQLGCTADILIIVSMLSVPSIFYRPKGREEDSDSAR
EKFQIPESDHLTYLNVYNQWKTNGYSTSWCNDHFIHAKAIRKVREVRQQLEEILKQQKME
VVSCGTDWDIVRKCICSAYFHQAARLKGIGEYVNCRTGMPCHLHPTSALFGMGFTPDYVV
YHELVMTAKEYMQCVTAVDGHWLAELGPMFFSVKETGRSGRAKRRQAMQHLHEMEGQMKE
AEEEMKARAQEQLEREQASVKRKEILTPGIREPGTPAPYRKTPGRLGL
NT seq
3387 nt
NT seq
+upstream
nt +downstream
nt
atgtcggaggattcaaatttatataggttagaaggatctgacaataaacctggtggctta
attattcgtaagaaagtttctgatcacacgtttaaaaagcctcaatcatctattttgggt
ttggataaactagcagaaagaaaacggcgagaaaactcacaagaacctacagaatccaaa
tctagattagatacaaaagaaagaaaatacagatctcatgaagaagaaacacctactcat
acaggtggagtaaattctgaggcacaaaaaagattggaaacaagactcaaacatcaaaga
ttaagtgcacaagaaaagcattcgaggtatcatgatcgtgatagagataggagaaaagac
agggataaagaacgtagtcgaagtagagatagtataagacaaactcctcttagatttaag
gatgaacctcaaacacctaaatttaggaccaaagatcctatatccaaaagtaattgggat
gatgatgaggatgaagaaccaaggaaatcaagttgggatcatcctacgccaaacctttat
gcttctagagatggtcgtgagagcgtcagaagtgaatttacaccttcatataaatataat
tcttggaacaaggattatagaccttccggtacaacaccaatgatagacggggaagaaaaa
gaattatgggaggaagaacagcaaaggcttgatagagaatggtatgcattggatgatgga
gaaaattatgcttttgccgatgtatcagaagaatatactcaaaaaaaggaaatggaatta
gaagcaaagagacagaaacgagtttcagctcagcagaggcaaataaacaaagataatgaa
ttatgggaaagaaatagaatgttaacttcaggtgttgtaagttccttagaccatgatgat
gatccagatgacgaagcagaaggaagagttcatcttctagttcataatgtagtacctcca
tttttagatgggcgaatcgtattcaccaagcagccagagcctgttgtacctgtgcgtgat
cctacttctgatatggcacttgtagcaagaaaaggttctgcattagtacgagcataccgc
gaacaaaaagaacgtcgtagagcacagaaaaaacattgggagttggctggaacacatata
ggtaacattatgggtgtacgtgacagaagaaaagaggataaagaacttcctggtcaggaa
acggattttaaagctggtcagaaatatgcaagacatataggtgctggtgagattactgga
gaagcaaaacaccgatctatacaacatcaaagaagaagtcttcctgtatttgccgtaaga
caggaacttttaaatgttattagagaaaatagtgtagttgtaatagtgggagaaactgga
agtggtaaaactactcaattaacgcaataccttcatgaggatggctatagttgttatgga
ataattggttgtacatgtcccagaagagtagctgctatgtcagttgccaaaagagtatcc
gatgaaatggctacagcattaggagaaaaagttggttacgcgattcgtttcgaggattgc
acatccaaagatactgttataaaatatatgacggatggtattttgttaagagaaagcttg
cgagaaggtgatttagatcgatatagtgtgataattatggatgaagctcatgaacgatct
ctctctactgatgttttgtttggtttacttagagaggttgttgcaaggagacatgattta
aaactgattgtaacttcagcgacaatggattcaagtaaattttctgcgttttttggaaat
gcagcaacatttcagattcctggtcgaacgtttcctgttgagattttgcatgcaaaaaat
ccagttgaagattatgtagacgctgctgtgaaacaagttttgcaaattcatttacaacca
cgaagtggagatatcttggtattcatgcctggtcaagaagacatcgaagtcacgtgtgaa
gcattgaaagaaagattggctgaaatagaatcagctcctccactttcaattttaccaata
tattctcaattgccgtcagatttacaagctaaaattttccaacgttcggaaggtggatta
cgtaaatgtgttgttgcaaccaatatagcagaaacatctttgacagtagatggaattgta
tttgtcgttgattcaggatattgtaaactgaaagtatataatccacgaattggtatggat
gctcttcaagtatatcctgtttcaagagctaatgctgatcaacgtgctggaagagctggt
cgtactggacctggttactgttacagattgtatacacgtagacaatatttagatgaacta
ctggcaacgggagtgccagaaattcaacgtacaaatttagccaataccgtattgcttctg
aaatcattaggagttcaagatttacttgctttccattttatggatcccccgccacaagac
aatatacttaattctttatatcagttatggatattgggtgctctcgatcatacaggacgg
ttaacacctttaggacgtcaaatggcagaatttcccttggatcctccacaatgtcaaatg
ctaatagttgcttctcagcttggttgtactgcagatattttaattatagtttctatgtta
tcagtaccttcaatattttatcgaccgaaaggtcgagaggaagattctgattcagcaaga
gaaaaatttcagattccagaatcagatcacttgacatatctcaatgtatataaccagtgg
aaaactaatggatattctacttcgtggtgtaacgatcattttatacatgcgaaagctata
cgcaaagtcagagaagtgcgccagcaactggaagaaattttaaagcagcaaaaaatggaa
gttgttagttgtggtactgattgggatatagtacggaaatgcatatgttccgcgtatttc
caccaggcagctcgattaaagggtatcggtgaatatgttaattgtcgtactggaatgccc
tgtcatcttcatcctacttcagctttatttggcatgggttttacacctgactatgtcgtt
tatcacgaactagtaatgaccgcaaaagaatatatgcaatgtgtaactgcggtcgatgga
cattggttagccgaactaggtcctatgttctttagtgtgaaagaaacaggacgaagtggt
cgtgcaaagcgacgacaagcgatgcaacatcttcatgaaatggagggtcaaatgaaagaa
gcagaagaggaaatgaaagcaagagcgcaagaacaactagaacgtgaacaagcttctgtt
aaaagaaaagagattcttacaccgggtatcagagaaccaggtacgccagcaccatatcgt
aaaactcctggacgtctaggattgtaa
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integrated database retrieval system
