Vespula pensylvanica (western yellowjacket): 122634801
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Entry
122634801 CDS
T07720
Name
(RefSeq) pre-mRNA-splicing factor syf1 homolog isoform X1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
vps
Vespula pensylvanica (western yellowjacket)
Pathway
vps03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vps00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122634801
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vps03019
]
122634801
03041 Spliceosome [BR:
vps03041
]
122634801
Messenger RNA biogenesis [BR:
vps03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
122634801
Spliceosome [BR:
vps03041
]
Complex B
Other components
Prp19-related factors
122634801
Complex C
122634801
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_8
TPR_2
TPR_12
TPR_15
ARM_TT21_C
PPR
NRDE-2
Mad3_BUB1_I
TPR_10
DHR-2_Lobe_A
Microp_apicomplexa_6
ATG1-like_MIT2
SNAP
Motif
Other DBs
NCBI-GeneID:
122634801
NCBI-ProteinID:
XP_043680045
LinkDB
All DBs
Position
16:567226..571426
Genome browser
AA seq
878 aa
AA seq
DB search
MIERKDTEGNLYTFYDEDLPYEEEILRNPYSVKHWQRYIDHLKNTKSNNLNMVYERALTE
LPGSYKLWYNYLRHRLSQLKKRCITDPLYEDVNNAFERALVFMHKMPRIWMDYCILMTKQ
CYITRTRQVFDRSLRALPITQHHRIWPLYIDFLKKHNVYETSVRVFRRYLKLAPEDTEEY
IEYLISIGRLDEAAIKLAQIVNQDDFVSKHGKSNHQLWNELCNLISKNPSKIKSLNVDAI
IRGGLRRYTDQLGPLWNSLADYYVRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFE
ELSLSKCIEDETIISTEDGNIELELRLARFEHLMERRLLLLNSVLLRQNPHNVQEWHKRI
KLYEGQPHEIINTYTEAVQTVQPQLAVGKLHTLWVAFGKFYEENNQIADARVIFERATHV
PYTKVDDLASVWCEWAEMEIRHGNCKEALKLMHRATAMPFRKVSYHDENETVQMRLYKSL
KVWSMYADLEESFGTFKTCKAVYDKIIDLKIATPQIIINYGLFLEENNYFEEAFRAYEKG
IALFKWPNVYDVWNTYLTKFLKRYGGTKLERTRDLFEQCLEHCPNKYAKALYLLYAKLEE
EHGLARHAMSVYERATSAVLPEERFEMFNIYIKKAADIYGVPKTRQIYEKAIEVLNDENT
REMCLRFAEMETKLGEVDRARAIYAHCSQICDPRVSSNFWKVWKEFEVQHGNEDTMREML
RIKRSVQAMYNTQVNMMSAQMLNNVSNQVSGVQIDSMRALDNKISDTTTQSGLKDTIKFV
RGITETDGKESSRVNNPDEIDIDMDDDNENEGEEEIEEGNNLIFYLFIISLMYVVFSYDI
IKCSFSFFVVEMSIEKQIIPSQVFGSLKTADNDTNEDE
NT seq
2637 nt
NT seq
+upstream
nt +downstream
nt
atgatagaacgaaaagataccgaagggaatttatatactttttacgatgaagatttacct
tatgaagaggaaatcttgcgaaatccatattccgtaaaacattggcagcgttatatcgat
catttgaaaaatacaaaaagtaataatttaaatatggtttatgaacgtgccttgacggaa
cttcctggaagttataagttatggtacaactatcttcgacaccggttaagtcaattaaaa
aaaagatgtataacagatcctctttatgaggatgtaaataatgcatttgaaagagcttta
gtatttatgcataaaatgccacgtatttggatggattattgcatattgatgacaaaacaa
tgctacataacacgtactcgtcaagtattcgatcgttctcttagagcacttccaattacg
cagcatcatcgtatatggccactttacatagactttttgaagaaacataacgtttatgaa
acatcggtcagagtattcagaagatatttgaagttggcacctgaggacacagaggaatat
attgaatacttgatatctattggaaggcttgatgaagcagctataaaacttgcacaaatt
gttaatcaggatgattttgtatcaaaacatggaaaatctaaccatcaattgtggaatgaa
ttatgtaatttgatatcaaaaaatccttctaaaataaaatctcttaatgtagatgctatt
atcagaggtggtttaaggagatacacagatcaattaggaccactatggaactcattagca
gattattacgttcgcagtggtctctttgagagggcaagagatatttatgaagaagctata
caaacagtgactaccgttagagactttacacaagtctttgatgcatatgcacaattcgaa
gaattaagtcttagtaaatgtatagaagatgaaacaattatttcaacagaggatggtaac
atagaattagaattacgcctagcaagatttgaacatcttatggaaaggagattattatta
cttaattcagtattattaagacaaaatcctcataatgtacaagaatggcataagagaata
aaactttatgaaggacagccgcacgagataattaatacatatacggaagcagtacaaact
gtgcaaccacaattagcagtaggcaagctacatactttgtgggttgcatttggcaagttt
tatgaagaaaataatcaaatagcagatgccagagttatatttgaaagagcaacccatgtt
ccctatactaaggtagatgatctagcatcggtatggtgcgagtgggctgaaatggagatc
agacatgggaattgtaaagaggctttaaaacttatgcatcgtgctacggccatgcctttc
cgtaaagtttcgtatcacgatgaaaatgaaaccgttcaaatgagattgtataaatcttta
aaagtgtggtccatgtatgccgatttggaagaaagtttcggtacattcaagacatgcaag
gcagtatatgataaaataatagatttaaaaatagcaacgcctcaaatcattattaactat
ggattattcttggaagaaaataattattttgaggaagcttttagggcatatgaaaaagga
atcgcgctctttaaatggcctaatgtatatgatgtatggaatacatatctcaccaaattt
ttgaaacgttatggtggaacaaaattggagcgtacgcgtgatttattcgagcagtgtcta
gaacactgtccaaataaatacgctaaagcgttatatttattgtatgcaaaattggaagag
gaacatggtttagctaggcacgcaatgtccgtgtacgaacgagcaactagtgcggtttta
cccgaagaaagatttgaaatgtttaacatatacataaagaaagcagcagatatttatggt
gtgccaaaaactaggcaaatatacgaaaaggctatcgaagttttgaatgatgaaaataca
agagaaatgtgtttaagatttgctgaaatggaaacaaagttaggagaagtagatagagca
agagctatatatgcacattgtagtcaaatatgcgatcctagggtatcatcgaacttttgg
aaagtgtggaaggaatttgaagtacagcatggaaatgaagacacgatgcgtgaaatgctt
agaatcaaacgtagtgtacaagctatgtataacacccaagtaaatatgatgtctgctcaa
atgttgaataatgtatctaatcaagtgtctggtgtacaaattgatagtatgcgtgcacta
gataacaaaatttctgacacaactactcaatctggattgaaggatactattaaatttgta
cgtggtataacagaaacagatggaaaagaatcatcgcgtgtaaataatccagatgaaatt
gatattgatatggatgatgataacgaaaatgaaggagaagaagagattgaagaaggtaac
aatcttatattctacctatttatcatttcacttatgtatgttgttttttcttatgatata
attaaatgttctttttctttttttgttgtagaaatgtctattgaaaaacagatcattcca
tcgcaagtatttggtagcttaaaaacagcagacaacgatacaaacgaagatgagtga
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