KEGG   Vespula pensylvanica (western yellowjacket): 122636876
Entry
122636876         CDS       T07720                                 
Name
(RefSeq) THO complex subunit 3
  KO
K12880  THO complex subunit 3
Organism
vps  Vespula pensylvanica (western yellowjacket)
Pathway
vps03013  Nucleocytoplasmic transport
vps03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:vps00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    122636876
  09122 Translation
   03013 Nucleocytoplasmic transport
    122636876
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:vps03019]
    122636876
   03041 Spliceosome [BR:vps03041]
    122636876
Messenger RNA biogenesis [BR:vps03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     122636876
Spliceosome [BR:vps03041]
 Complex C
  Other components
   EJC/TREX
    122636876
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    122636876
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_IFT122_1st Beta-prop_WDR5 WD40_CDC20-Fz WD40 WD40_Prp19 Beta-prop_WDR3_1st Beta-prop_EML_2 WD40_WDHD1_1st EIF3I WDR55 ANAPC4_WD40 Beta-prop_Aladin Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR19_1st Beta-prop_WDR3_2nd WD40_Gbeta Beta-prop_CAF1B_HIR1 Beta-prop_RIG_2nd Beta-prop_TEP1_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_Vps41 Beta-prop_IFT140_1st WD40_MABP1-WDR62_2nd Beta-prop_WDR36-Utp21_1st Beta-prop_HPS5 Beta-prop_EML RMC1_N eIF2A Tricorn_2nd Beta-prop_NOL10_N WD40_MABP1-WDR62_1st Beta-prop_WDR35_TULP_N Beta-prop_ELP1_1st NBCH_WD40 WDR90_beta-prop_4th PAC11 Beta-prop_TEP1_C DSE1_N B-prop_COPA_B_2nd TRM82_WD PD40 Beta-prop_WDR75_1st Beta-prop_DCAF12 Beta-prop_EIPR1 Beta-prop_Nup120_160 Beta-prop_NUP159_NUP214 PROPPIN vWF_A DPPIV_N
Other DBs
NCBI-GeneID: 122636876
NCBI-ProteinID: XP_043684466
LinkDB
Position
24:1826632..1828650
AA seq 322 aa
MATSSPRVEDLINYFKSHNKIREQQSHSAKVHSVGWSCDGKLLASGSFDKSVCIFSLGPD
RLKQEITFRGHGGSVDQLCWHAFCPELLSTASGDKTVRIWDTRTQKCTANISTRGENINI
SWSPDGNTIAVGNKEDLVTFIDARVMKIRAEEQFNFEVNEISWNKDSDTFYLTNGQGCVH
ILSYPELELLHVIKAHPGTCICIEFDPTGRYFATGSADALVSLWDADELCCLRTFSRLEW
PVRTISFSYDGQLLAAASEDLVIDIGEVETGEKIADIPVEAATFTVAWHPKQYLLAYACD
DKDTYDRKRDAGSLKVFGFAND
NT seq 969 nt   +upstreamnt  +downstreamnt
atggcgacttctagtccacgcgtggaagatttgataaattattttaaatcgcataacaaa
attagagagcaacaaagtcattcggctaaggttcatagcgttggatggagctgtgatgga
aaattattagcttcaggttcctttgacaaatccgtttgtatattttctcttggaccagac
cgattaaaacaagaaataacttttagaggacatggaggtagtgtagatcaattgtgttgg
cacgcattttgtccggaattactatcaactgcaagtggagataaaaccgttcgtatttgg
gatacaagaacccaaaaatgtactgctaatatcagtactagaggggaaaatattaatata
tcatggtcacctgatggtaataccatagctgttggaaataaggaagatcttgtaacattc
attgatgccagagttatgaaaatacgtgccgaagaacaatttaacttcgaagtgaatgag
atttcatggaataaggattctgatacattttatttaacaaatggtcaaggctgtgtacat
attcttagctatccagaattagaattattacatgtgataaaagcacatccaggaacgtgt
atatgcatagaatttgatccaactggacgttattttgcaactggctctgcggatgcatta
gtgtctttatgggatgcagatgaattgtgttgtttaagaacattctcaagattagaatgg
ccagtaaggacaatatccttttcctatgatggacaattattagcagcagcatcagaggat
ttagttatagatattggtgaggtagaaacaggagagaagatagctgatattccagttgaa
gctgcaacatttactgttgcttggcatccaaaacaatatttacttgcttatgcttgtgat
gataaagatacatatgataggaaaagagatgctggtagtttaaaagtatttggatttgct
aatgactga

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