Vespula pensylvanica (western yellowjacket): 122636992
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Entry
122636992 CDS
T07720
Name
(RefSeq) fibril-forming collagen alpha chain-like
KO
K19719
collagen type II alpha
Organism
vps
Vespula pensylvanica (western yellowjacket)
Pathway
vps04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
vps00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
122636992
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
vps00536
]
122636992
Glycosaminoglycan binding proteins [BR:
vps00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
122636992
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Motif
Other DBs
NCBI-GeneID:
122636992
NCBI-ProteinID:
XP_043684692
LinkDB
All DBs
Position
24:complement(1987838..1995639)
Genome browser
AA seq
1503 aa
AA seq
DB search
MRRGYLDLAAGLLILQFLFLLPQVYSVKTRQRKHRLRQVQSQQPVNSDYSEYDYYDNYED
YEDKNETSSSSSIPPTNTNNSERRKETIDPTLSPFRSELPTDLSAPQTTTRFFDQEELHS
TVETYNNHNQLATEIIPGESNHISSVAIPGPRGQPGRPGDSGRPGDAGFPGQPGTPGIPG
PPGPPGPLPDVSLYYQQLALSQASEDKGPTDAAFRPEYYLQTNVGPVGPRGPAGPAGSPG
PQGFQGLRGEPGEPGLPGAPGAPGPRGLPGLPGRDGEGGENGEIGPPGSPGPVGPRGLSG
MPGLPGVKGHRGFPGLDGAKGEQGISGEKGSAGAPGPMGPIGPVGPVGPRGERGREGLSG
PPGIRGINGLPGPPGQPGALGKPGPPGFPGNPGVKGDQGAQGPKGSQGLQGPRGEAGRPG
QPGESGPQGLQGKDGISGEKGSPGTPGSVGLPGFPGSRGQPGIPGNPGLSGAKGMPGLPG
ERGFKGDAGTKGEQGAPGPRGFPGPPGPEGKRGKRGLHGPIGAPGSPGERGTPGIRGLPG
SDGPMGPKGQPGDRGPTGPIGSKGTMGDPGRPGSPGIQGIRGITGRPGSPGKPGNVGERG
IQGADGKPGEQGPQGPQGLPGSLGPPGEKGFPGEAGKDGEPGNPGPPGPRGDAGKEGSPG
LQGPPGPPGSAGERGPQGLTGPRGFQGIPGISGNPGIPGKDGEVGVQGPPGPTGSAGNRG
ERGFPGERGLIGAPGLAGARGEPGIQGVDGPPGSPGLKGDMGHPGPPGLVGLPGIRGFPG
ESGQKGERGMMGPVGPEGPPGRIGERGPQGQVGLPGLPGEPAERGDTGLPGPPGETGAPG
AQGERGPQGLQGLQGFPGQQGLIGLPGLKGDRGYPGSKGDQGNPGLAGSPGEVGPPGLTG
LTGAKGIRGEPGPRGEVGSIGSPGPAGITGQPGLPGIAGPAGPPGLPGIKGNAGDTGRPG
NPGSIGNPGIPGADGNKGESGAQGPPGLIGSQGPQGLPGERGLPGLPGPSGLVGARGIRG
ATGETGLPGKPGVEGPPGPPGLIGPVGPPGPIGEQGPEGPSGKPGPPGISGRPGDKGPPG
AIGVEGPSGPPGIPGPPGKAGLSGPIGERGPKGEMGPQGVEGPQGARGKPGPVGIQGAKG
ERGDEGAKGAKGHRGFNGLQGLPGSPGIPGDKGIPGAPGLPGKEGEPGVRGNPGRDGNPG
LIGLTGNPGPRGPPGEEGRHGLPGPPGPPGPPGPPGELGLGYDAASLAAFLGQSQTKGPD
PLVGDEPARFFGKEITEEERKSLVLKAYEQLKSSFQKLIKPDGQKNSPAKTCRDLFVAYP
EKTSGEYWIDPNEGDARDAILVYCDSEKHATCILPNPSRTGEINYIGEQQEVWLSEIGDA
KIMYKADSNQISFLQLLSKHAQQNITYHCKNSVAYFDSERKSYRRSMKLLAWNDVEIMPR
GNQRLRYDMIVDECRLRPDHWSQTIVSYNSDKPVRLPIIDVALRDIGLPDQIFSIEVGPA
CYQ
NT seq
4512 nt
NT seq
+upstream
nt +downstream
nt
atgagacgagggtacctcgatttggccgctggccttttgattttacaatttttattctta
ctaccccaagtatattcggttaaaacgagacagagaaaacatcgacttagacaagtccaa
tctcagcaaccagttaacagtgactacagcgagtacgattactatgataattatgaggac
tatgaggataaaaatgaaacatcgtcgtcttcatctatccccccaacaaataccaataat
tcagaacgtagaaaagaaacaatcgatccgaccttgtcaccgtttagatcagaactacct
accgatttatctgcaccccaaacaacaacacgattcttcgaccaagaagaattgcattct
acggttgaaacctataataatcataatcaattagcgacggaaattatacccggagaaagt
aatcatataagttcagtggcaatacctggaccacgtggacaacctggacgtccaggcgat
agtggaagaccgggtgacgcaggctttcctggacaaccgggaactcctggaattccagga
ccacctggaccacctggacctctacctgatgtgtcactgtattatcaacaacttgctcta
tctcaagcgagtgaagataaaggtccaacggatgctgcattcaggccggagtattatctt
caaacaaacgtaggtcctgttggtccccgaggacctgcaggaccagcaggttcacctggt
ccacaaggtttccaaggtcttcgtggagaacctggagaacctggattaccaggtgcacca
ggagctcctggtccacgaggtttgccaggattgccaggaagagatggtgaaggtggtgag
aatggagaaataggtccaccgggatcaccaggaccagtaggtccaagaggactttctgga
atgcctggtctaccaggtgtaaaaggacatcgtggctttccaggattagatggtgctaaa
ggtgaacaaggtatatctggagaaaaaggatctgcaggagcacctggtccgatgggacct
ataggaccagtgggtcctgttggtccacgcggagaaagaggcagagagggattatcaggt
ccacctggaataagaggaatcaatggtcttcctggaccaccaggacaacctggtgcttta
ggtaaacccggtccacctgggttcccaggtaatcctggagttaaaggagatcaaggagct
caaggtccaaaaggaagtcaaggcttacaaggtccacgtggcgaagcaggacgtccagga
cagcctggagaatctggtccgcaaggtttacaaggaaaagatgggatatctggtgaaaaa
ggaagtccaggaacacctggttcagttggtttacctggcttccctggatcacgtggacag
cctggtataccaggtaatcctggtttatcaggagctaagggaatgcctggattgcctggt
gaaagaggttttaaaggtgacgctggaacaaaaggagaacaaggagcacctggtccacgt
ggttttccaggaccacctggtcccgaagggaaaagaggaaaaagaggattacatggcccg
ataggagcacctggatcacctggtgaacgcggcacgccaggaatacgtggcttgcccgga
tccgatggtcctatgggtcctaaaggtcaacctggtgatcgtggacccacaggtccaata
ggttcgaaaggaacaatgggagatccaggtcgtccgggatctcccggaatacagggtata
cgtggtataacaggccgtcctggttcacctggtaaaccaggtaatgtaggggaacgtgga
attcaaggtgcagatggaaaacctggcgaacaaggtccgcaaggaccacaaggtttacct
ggatcattaggtccaccaggagagaaaggttttccaggcgaagctggcaaagatggtgaa
cctggtaatcctggaccacctggacctagaggtgacgcaggtaaagaaggttctccagga
ttacaaggaccaccaggaccacctggcagtgctggagaaagaggacctcagggattaact
gggcctagaggttttcagggtattcctggaatttctggcaatcctggaataccaggtaaa
gatggtgaagtgggtgttcaaggacctcctggtcccacgggttctgctggaaatagaggc
gagcgtggttttcccggtgaaaggggattaattggagcaccaggattggcaggagctaga
ggagaaccaggcattcaaggtgtcgacgggcctcctggatctcctgggcttaaaggagat
atgggacatcctggtccaccaggattggtgggtttacctggaatacgtggcttccctgga
gaatctggacagaaaggtgaaagaggaatgatgggtccagttggaccggaaggaccgccg
ggtcgtattggagaacggggcccgcaaggtcaagtaggtcttccaggacttcctggagag
ccagctgaaagaggagatacaggtttgccaggtccgccaggtgagacaggagctccaggt
gcgcaaggagaaagaggacctcaaggtctacagggattgcaaggatttccagggcagcaa
ggacttattggacttccaggcttgaaaggagatcgtggttatccaggttcgaaaggagat
caagggaatccaggattagctggtagtccaggtgaagtaggaccaccaggtttgacgggt
ctaactggtgcaaaaggaatacgaggagaacctggtcctagaggagaagtaggttctata
ggctctcctggaccagcaggcataaccggacaacccggattgcctggcatagctggtcct
gcaggtccacctggactgcctggtattaaaggtaatgctggagatacgggaagaccaggg
aatcctggttctataggaaatcctggcattcctggtgcagacggaaataaaggtgaaagt
ggagcacaaggtccaccaggtctgataggatcacaaggaccgcaaggtttaccaggagaa
cgaggtttgccaggacttcctggtccatcgggattagtaggtgctagaggaatacgcgga
gctactggtgaaacaggcttaccaggaaagccaggagtagagggaccgcctggaccccca
ggattgataggtcctgttggacctcctggtcctattggggaacaaggtcccgaaggacct
tctggtaaaccaggtccacctggaataagtggtcgacctggtgacaaaggaccaccaggt
gctattggagtagaaggaccatctgggcctcctggtatacctggacctccgggtaaggct
ggattatctggtcctatcggagaacgtggtccaaaaggagaaatgggaccacaaggtgta
gaaggaccacagggtgctagaggaaagcctggtccagtaggtatacaaggtgcaaagggt
gaacgtggcgatgaaggtgcgaaaggtgctaaaggacatcgtggattcaatggattacaa
ggtttacctggatcgccaggaattcctggagataaaggtattccaggagcgcctggttta
ccaggaaaagagggagaacctggtgttagaggaaatcctggtagagatggaaatcctggc
ttgattggacttactggtaatccaggaccaagaggacctcctggagaagaaggtcgacat
ggattaccaggtccacctggtccaccaggaccacctggacctcctggagaacttggatta
ggatatgatgctgcctcgttggcagctttcttaggacaaagccaaacaaaaggacccgat
ccattagtaggcgatgagccagcaagattttttggtaaagaaattacggaagaggaacgt
aaaagtctcgtattgaaggcttatgagcaattaaaatcgtcgttccaaaaattaattaaa
ccggatggacagaaaaattcgccagctaaaacttgtagagatttgtttgttgcctatcca
gaaaaaacatctggggaatattggattgatccaaacgaaggtgacgcacgagatgcgatc
ttagtttattgcgactctgagaaacatgcaacgtgtattttaccaaatccatctcgtaca
ggagagattaattacatcggtgaacagcaagaagtttggttgagtgaaataggagatgca
aagatcatgtataaagcagacagcaatcaaataagtttcttgcaattgctttcaaaacat
gcccaacagaatataacttatcattgcaaaaatagtgttgcatattttgattctgaacga
aagagttatagaagaagtatgaaacttcttgcttggaacgatgttgaaataatgccacgt
ggtaatcaacgtttgcgatatgatatgattgtagatgaatgcagattacgtcctgatcat
tggagtcaaactattgtttcatacaactcggataaaccagtaagacttcctataatagac
gtagctctgcgagacattggactacctgatcagattttctctatcgaagtaggaccagct
tgttatcaataa
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